Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol ROC5
Gene Symbol Synonym Roc5(t), Roc5, GL2-5, OsROC5
CGSNL Gene Name RICE OUTMOST CELL-SPECIFIC GENE 5
Gene Name Synonym Rice outmost cell-specific gene 5(t), Rice outermost cell-specific gene-5, Homeobox-leucine zipper protein ROC5, Homeodomain transcription factor ROC5, HD-ZIP protein ROC5, Protein RICE OUTERMOST CELL-SPECIFIC 5, GLABRA 2-like homeobox protein 5, outcurved leaf1, Rice ooutmost cell-specific gene5
Protein Name HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC5
Allele oul1
Chromosome No. 2
Explanation A GL2-type of homeobox gene. This gene is located on chromosome 2 at 44.5 cM of map position. Gl2-type homeobox. Arabidopsis GLABRA2 ortholog. homeodomain leucine zipper class IV gene. Q6EPF0. AB101648.
Trait Class Vegetative organ - Leaf
Other
Expression
Sequence/Locus
cDNA Accession No. AK111544
MSU ID LOC_Os02g45250.1
RAP ID Os02g0674800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Abbai R., Singh V.K., Nachimuthu V.V., Sinha P., Selvaraj R., Vipparla A.K., Singh A.K., Singh U.M., Varshney R.K., Kumar A.
Plant Biotechnol. J. 2019   
Haplotype analysis of key genes governing grain yield and quality traits across 3K RG panel reveals scope for the development of tailor-made rice with enhanced genetic gains.
Xu P., Ali A., Han B., Wu X.
Front Plant Sci 2018  9  1528
Current Advances in Molecular Basis and Mechanisms Regulating Leaf Morphology in Rice.
Zheng X., Yang S., Zhang D., Zhong Z., Tang X., Deng K., Zhou J., Qi Y., Zhang Y.
Plant Cell Rep. 2016   
Effective screen of CRISPR/Cas9-induced mutants in rice by single-strand conformation polymorphism.
Yang S.Q., Li W.Q., Miao H., Gan P.F., Qiao L., Chang Y.L., Shi C.H., Chen K.M.
Rice (N Y) 2016  9(1)  37
rel2, A Gene Encoding An Unknown Function Protein which Contains DUF630 and DUF632 Domains Controls leaf rolling in Rice.
Huang,C.F., Yamaji,N., Ono,K. and Ma,J.F.
Plant J. 2012  69(4)  565-576
A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots
Zou L.P. , Sun X.H. , Zhang Z.G. , Liu P. , Wu J.X. , Tian C.J. , Qiu J.L. , Lu T.G.
Plant Physiol. 2011  156(3)  1589-602
Leaf Rolling Controlled by the Homeodomain Leucine Zipper Class IV Gene Roc5 in Rice.
Ito, M., N. Sentoku, A. Nishimura, S.K. Hong, Y. Sato and M. Matsuoka
Breeding Science 2003  53  245-253
Roles of rice GL2-type homeobox genes in epidermis differentiation.
TextPresso Search Search textpresso for ROC5 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0061420
Ontologies
Gene Ontology response to water deprivation( GO:0009414 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
Trait Ontology embryo related trait( TO:0000064 )
leaf shape( TO:0000492 )
leaf rolling( TO:0000085 )
drought tolerance( TO:0000276 )
Plant Ontology plant embryo( PO:0009009 )
vascular leaf( PO:0009025 )
Related Strains
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Phenotype images
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Last updated
Sep 3, 2019


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