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Basic Information
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CGSNL Gene Symbol
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ROC4
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Gene Symbol Synonym
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Roc4(t), Roc4, GL2-4, OsROC4, OsGL2-4, OsHDZ16, OsHDZIP16, HDZ16, HDZIP16
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CGSNL Gene Name
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RICE OUTMOST CELL-SPECIFIC GENE 4
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Gene Name Synonym
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Rice outmost cell-specific gene 4(t), Rice outermost cell-specific gene-4, Homeobox-leucine zipper protein ROC4, Homeodomain transcription factor ROC4, HD-ZIP protein ROC4, Protein RICE OUTERMOST CELL-SPECIFIC 4, GLABRA 2-like homeobox protein 4, homeodomain-leucine zipper transcription factor 16, OsHDZIP transcription factor 16
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Protein Name
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HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC4
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Allele
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roc4
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Chromosome No.
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4
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Explanation
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Q7Y0V9. A GL2-type of homeobox gene. This gene is located on chromosome 4 at 38.2 cM map position. Gl2-type homeobox. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:1904278: positive regulation of wax biosynthetic process. GO:1900367: positive regulation of defense response to insect. GO:1902584: positive regulation of response to water deprivation.
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Trait Class
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Other
Tolerance and resistance - Insect resistance
Reproductive organ - Heading date
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK112099
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MSU ID
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LOC_Os04g48070.1
LOC_Os04g48070.2
LOC_Os04g48070.3
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RAP ID
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Os04g0569100
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Tao Z., Zhu L., Li H., Sun B., Liu X., Li D., Hu W., Wang S., Miao X., Shi Z.
Nat Commun 2024 15(1) 8107
ACL1-ROC4/5 complex reveals a common mechanism in rice response to brown planthopper infestation and drought.
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Zhang X., Feng Q., Miao J., Zhu J., Zhou C., Fan D., Lu Y., Tian Q., Wang Y., Zhan Q., Wang Z.Q., Wang A., Zhang L., Shangguan Y., Li W., Chen J., Weng Q., Huang T., Tang S., Si L., Huang X., Wang Z.X., Han B.
Plant Cell 2023
The WD40 domain-containing protein Ehd5 positively regulates flowering in rice (Oryza sativa).
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Mahtha S.K., Kumari K., Gaur V., Yadav G.
Comput Struct Biotechnol J 2023 21 3946-3963
Cavity architecture based modulation of ligand binding tunnels in plant START domains.
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Gonin M., Jeong K., Coudert Y., Lavarenne J., Giang Thi Hoang, Bes M., Huong Thi Mai To, Marie-Rose Ndella Thiaw, Toan Van Do, Moukouanga D., Soazig Guyomarc'h, Bellande K., Jean-Rémy Brossier, Parizot B., Hieu Trang Nguyen, Beeckman T., Véronique Bergougnoux, Rouster J., Sallaud C., Laplaze L., Champion A., Gantet P.
Plant J. 2022 111(2) 546-566
CROWN ROOTLESS1 binds DNA with a relaxed specificity and activates OsROP and OsbHLH044 genes involved in crown root formation in rice.
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Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022 9(8)
The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
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Guo T., Wang D., Fang J., Zhao J., Yuan S., Xiao L., Li X.
Int J Mol Sci 2019 20(10)
Mutations in the Rice <i>OsCHR4</i> Gene, Encoding a CHD3 Family Chromatin Remodeler, Induce Narrow and Rolled Leaves with Increased Cuticular Wax.
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Wang Z., Tian X., Zhao Q., Liu Z., Li X., Ren Y., Tang J., Fang J., Xu Q., Bu Q.
Plant Cell 2018 30(1) 228-244
The E3 Ligase DROUGHT HYPERSENSITIVE Negatively Regulates Cuticular Wax Biosynthesis by Promoting the Degradation of Transcription Factor ROC4 in Rice.
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Huang,C.F., Yamaji,N., Ono,K. and Ma,J.F.
Plant J. 2012 69(4) 565-576
A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots
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Ito, M., N. Sentoku, A. Nishimura, S.K. Hong, Y. Sato and M. Matsuoka
Breeding Science 2003 53 245-253
Roles of rice GL2-type homeobox genes in epidermis differentiation.
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DB Reference
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Gramene ID
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GR:0061419
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Ontologies
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Gene Ontology
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defense response to insect( GO:0002213 )
positive regulation of long-day photoperiodism, flowering( GO:0048578 )
photoperiodism, flowering( GO:0048573 )
response to jasmonic acid stimulus( GO:0009753 )
response to salt stress( GO:0009651 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
wax biosynthetic process( GO:0010025 )
response to water deprivation( GO:0009414 )
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Trait Ontology
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embryo related trait( TO:0000064 )
leaf shape( TO:0000492 )
drought tolerance( TO:0000276 )
salt tolerance( TO:0006001 )
jasmonic acid sensitivity( TO:0000172 )
flowering time( TO:0002616 )
days to heading( TO:0000137 )
brown planthopper resistance( TO:0000424 )
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Plant Ontology
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plant embryo( PO:0009009 )
vascular leaf( PO:0009025 )
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Related Strains
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Phenotype images
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Last updated
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Dec 10, 2024
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Update info.