Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol ROC4
Gene Symbol Synonym Roc4(t), Roc4, GL2-4, OsROC4, OsGL2-4, OsHDZ16, OsHDZIP16, HDZ16, HDZIP16
CGSNL Gene Name RICE OUTMOST CELL-SPECIFIC GENE 4
Gene Name Synonym Rice outmost cell-specific gene 4(t), Rice outermost cell-specific gene-4, Homeobox-leucine zipper protein ROC4, Homeodomain transcription factor ROC4, HD-ZIP protein ROC4, Protein RICE OUTERMOST CELL-SPECIFIC 4, GLABRA 2-like homeobox protein 4, homeodomain-leucine zipper transcription factor 16, OsHDZIP transcription factor 16
Protein Name HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC4
Allele roc4
Chromosome No. 4
Explanation Q7Y0V9. A GL2-type of homeobox gene. This gene is located on chromosome 4 at 38.2 cM map position. Gl2-type homeobox. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:1904278: positive regulation of wax biosynthetic process.
Trait Class Other
Tolerance and resistance - Stress tolerance
Reproductive organ - Heading date
Expression
Sequence/Locus
cDNA Accession No. AK112099
MSU ID LOC_Os04g48070.1
LOC_Os04g48070.2
LOC_Os04g48070.3
RAP ID Os04g0569100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Zhang X., Feng Q., Miao J., Zhu J., Zhou C., Fan D., Lu Y., Tian Q., Wang Y., Zhan Q., Wang Z.Q., Wang A., Zhang L., Shangguan Y., Li W., Chen J., Weng Q., Huang T., Tang S., Si L., Huang X., Wang Z.X., Han B.
Plant Cell 2023   
The WD40 domain-containing protein Ehd5 positively regulates flowering in rice (Oryza sativa).
Mahtha S.K., Kumari K., Gaur V., Yadav G.
Comput Struct Biotechnol J 2023  21  3946-3963
Cavity architecture based modulation of ligand binding tunnels in plant START domains.
Gonin M., Jeong K., Coudert Y., Lavarenne J., Giang Thi Hoang, Bes M., Huong Thi Mai To, Marie-Rose Ndella Thiaw, Toan Van Do, Moukouanga D., Soazig Guyomarc'h, Bellande K., Jean-Rémy Brossier, Parizot B., Hieu Trang Nguyen, Beeckman T., Véronique Bergougnoux, Rouster J., Sallaud C., Laplaze L., Champion A., Gantet P.
Plant J. 2022  111(2)  546-566
CROWN ROOTLESS1 binds DNA with a relaxed specificity and activates OsROP and OsbHLH044 genes involved in crown root formation in rice.
Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022  9(8) 
The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
Guo T., Wang D., Fang J., Zhao J., Yuan S., Xiao L., Li X.
Int J Mol Sci 2019  20(10) 
Mutations in the Rice <i>OsCHR4</i> Gene, Encoding a CHD3 Family Chromatin Remodeler, Induce Narrow and Rolled Leaves with Increased Cuticular Wax.
Wang Z., Tian X., Zhao Q., Liu Z., Li X., Ren Y., Tang J., Fang J., Xu Q., Bu Q.
Plant Cell 2018  30(1)  228-244
The E3 Ligase DROUGHT HYPERSENSITIVE Negatively Regulates Cuticular Wax Biosynthesis by Promoting the Degradation of Transcription Factor ROC4 in Rice.
Huang,C.F., Yamaji,N., Ono,K. and Ma,J.F.
Plant J. 2012  69(4)  565-576
A leucine-rich repeat receptor-like kinase gene is involved in the specification of outer cell layers in rice roots
Ito, M., N. Sentoku, A. Nishimura, S.K. Hong, Y. Sato and M. Matsuoka
Breeding Science 2003  53  245-253
Roles of rice GL2-type homeobox genes in epidermis differentiation.
TextPresso Search Search textpresso for ROC4 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0061419
Ontologies
Gene Ontology positive regulation of long-day photoperiodism, flowering( GO:0048578 )
photoperiodism, flowering( GO:0048573 )
response to jasmonic acid stimulus( GO:0009753 )
response to salt stress( GO:0009651 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
wax biosynthetic process( GO:0010025 )
response to water deprivation( GO:0009414 )
Trait Ontology embryo related trait( TO:0000064 )
leaf shape( TO:0000492 )
drought tolerance( TO:0000276 )
salt tolerance( TO:0006001 )
jasmonic acid sensitivity( TO:0000172 )
flowering time( TO:0002616 )
days to heading( TO:0000137 )
Plant Ontology plant embryo( PO:0009009 )
vascular leaf( PO:0009025 )
Related Strains
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Phenotype images
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Last updated
Jan 15, 2024


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