Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol ROC3
Gene Symbol Synonym Roc3(t), Roc3, GL2-3, OsHDZ39, OsHDZIP39, HDZ39, HDZIP39
CGSNL Gene Name RICE OUTMOST CELL-SPECIFIC GENE 3
Gene Name Synonym Rice outmost cell-specific gene 3(t), Rice outermost cell-specific gene-3, Homeobox-leucine zipper protein ROC3, Homeodomain transcription factor ROC3, HD-ZIP protein ROC3, Protein RICE OUTERMOST CELL-SPECIFIC 3, GLABR 2-like homeobox protein 3, homeodomain-leucine zipper transcription factor 39, OsHDZIP transcription factor 39
Protein Name HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC3
Allele
Chromosome No. 10
Explanation A2ZAI7(indica). Q336P2(japonica). A GL2-type of homeobox gene. This gene is located on chromosome 10 at 86.1 cM of map position. Gl2-type homeobox. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein).
Trait Class Tolerance and resistance - Stress tolerance
Other
Expression
Sequence/Locus
cDNA Accession No. AK071939
MSU ID LOC_Os10g42490.1
LOC_Os10g42490.2
RAP ID Os10g0575600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Mahtha S.K., Kumari K., Gaur V., Yadav G.
Comput Struct Biotechnol J 2023  21  3946-3963
Cavity architecture based modulation of ligand binding tunnels in plant START domains.
Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022  9(8) 
The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
Ito, M., N. Sentoku, A. Nishimura, S.K. Hong, Y. Sato and M. Matsuoka
Breeding Science 2003  53  245-253
Roles of rice GL2-type homeobox genes in epidermis differentiation.
DB Reference
Gramene ID GR:0061418
Ontologies
Gene Ontology response to brassinosteroid stimulus( GO:0009741 )
response to salt stress( GO:0009651 )
transcription( GO:0006350 )
nucleus( GO:0005634 )
sequence-specific DNA binding( GO:0043565 )
transcription factor activity( GO:0003700 )
regulation of transcription, DNA-dependent( GO:0006355 )
Trait Ontology embryo related trait( TO:0000064 )
leaf shape( TO:0000492 )
salt tolerance( TO:0006001 )
brassinosteroid sensitivity( TO:0002677 )
Plant Ontology plant embryo( PO:0009009 )
vascular leaf( PO:0009025 )
leaf( PO:0025034 )
root( PO:0009005 )
inflorescence( PO:0009049 )
endosperm( PO:0009089 )
Related Strains
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Phenotype images
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Last updated
Nov 29, 2023

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