Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | ROC3 |
| Gene Symbol Synonym | Roc3(t), Roc3, GL2-3, OsHDZ39, OsHDZIP39, HDZ39, HDZIP39 |
| CGSNL Gene Name | RICE OUTMOST CELL-SPECIFIC GENE 3 |
| Gene Name Synonym | Rice outmost cell-specific gene 3(t), Rice outermost cell-specific gene-3, Homeobox-leucine zipper protein ROC3, Homeodomain transcription factor ROC3, HD-ZIP protein ROC3, Protein RICE OUTERMOST CELL-SPECIFIC 3, GLABR 2-like homeobox protein 3, homeodomain-leucine zipper transcription factor 39, OsHDZIP transcription factor 39 |
| Protein Name | HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC3 |
| Allele | |
| Chromosome No. | 10 |
| Explanation | A2ZAI7(indica). Q336P2(japonica). A GL2-type of homeobox gene. This gene is located on chromosome 10 at 86.1 cM of map position. Gl2-type homeobox. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). |
| Trait Class |
Tolerance and resistance - Stress tolerance
Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK071939
|
| MSU ID |
LOC_Os10g42490.1
LOC_Os10g42490.2 |
| RAP ID |
Os10g0575600 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
Link to INSD Accession List |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
|
Mahtha S.K., Kumari K., Gaur V., Yadav G.
Comput Struct Biotechnol J 2023 21 3946-3963 Cavity architecture based modulation of ligand binding tunnels in plant START domains.
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Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022 9(8) The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
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Ito, M., N. Sentoku, A. Nishimura, S.K. Hong, Y. Sato and M. Matsuoka
Breeding Science 2003 53 245-253 Roles of rice GL2-type homeobox genes in epidermis differentiation.
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| DB Reference | |
| Gramene ID | GR:0061418 |
| Ontologies | |
| Gene Ontology |
response to brassinosteroid stimulus( GO:0009741 )
response to salt stress( GO:0009651 ) transcription( GO:0006350 ) nucleus( GO:0005634 ) sequence-specific DNA binding( GO:0043565 ) transcription factor activity( GO:0003700 ) regulation of transcription, DNA-dependent( GO:0006355 ) |
| Trait Ontology |
embryo related trait( TO:0000064 )
leaf shape( TO:0000492 ) salt tolerance( TO:0006001 ) brassinosteroid sensitivity( TO:0002677 ) |
| Plant Ontology |
plant embryo( PO:0009009 )
vascular leaf( PO:0009025 ) leaf( PO:0025034 ) root( PO:0009005 ) inflorescence( PO:0009049 ) endosperm( PO:0009089 ) |
| Related Strains | |
| - | |
| Phenotype images | |
| - | |
| Last updated | |
| Nov 29, 2023 | |
