Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol ROC1
Gene Symbol Synonym Roc1(t), GL2-1, OsHDZ23, OsHDZIP23, HDZ23, HDZIP23
CGSNL Gene Name RICE OUTMOST CELL-SPECIFIC GENE 1
Gene Name Synonym Rice outmost cell-specific gene 1(t), Rice outermost cell-specific gene-1, Homeobox-leucine zipper protein ROC1, Homeodomain transcription factor ROC1, HD-ZIP protein ROC1, Protein RICE OUTERMOST CELL-SPECIFIC 1, GLABRA 2-like homeobox protein 1, homeodomain-leucine zipper transcription factor 23, OsHDZIP transcription factor 23
Protein Name HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC1
Allele
Chromosome No. 8
Explanation Q6ZAR0. GL2-type homeobox gene. This gene is located on chromosome 8 at 84.2 cM map position. This gene is specifically expressed in the L1 protoderm, and therefore is a suitable marker for the epidermal layer. GLABRA2(Gl2)-type homeobox. an ortholog of an Arabidopsis L1-specific gene ATML1. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein).
Trait Class Other
Expression
Sequence/Locus
cDNA Accession No. AK120496
MSU ID LOC_Os08g08820.1
LOC_Os08g08820.2
RAP ID Os08g0187500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Mahtha S.K., Kumari K., Gaur V., Yadav G.
Comput Struct Biotechnol J 2023  21  3946-3963
Cavity architecture based modulation of ligand binding tunnels in plant START domains.
Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022  9(8) 
The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
Qi D., Wen Q., Meng Z., Yuan S., Guo H., Zhao H., Cui S.
Plant J. 2020  104(4)  901-916
OsLFR is essential for early endosperm and embryo development by interacting with SWI/SNF complex members in Oryza sativa.
Liu S., Fu H., Jiang J., Chen Z., Gao J., Shu H., Zhang S., Yang C., Liu J.
Front Plant Sci 2019  10  848
Overexpression of a CPYC-Type Glutaredoxin, <i>OsGrxC2.2</i>, Causes Abnormal Embryos and an Increased grain weight in Rice.
Yi J., Lee Y.S., Lee D.Y., Cho M.H., Jeon J.S., An G.
J. Exp. Bot. 2016  67(8)  2425-37
OsMPK6 plays a critical role in cell differentiation during early embryogenesis in Oryza sativa.
Akiba T., Hibara K.I., Kimura F., Tsuda K., Shibata K., Ishibashi M., Moriya C., Nakagawa K., Kurata N., Itoh J.I., Ito Y.
Plant Cell Physiol. 2014  55(1)  42-51
Organ fusion and defective shoot development in ONI3 mutants of rice.
Tsuda K., Akiba T., Kimura F., Ishibashi M., Moriya C., Nakagawa K., Kurata N., Ito Y.
Plant Cell Physiol. 2013  54(2)  209-17
ONION2 fatty acid elongase is required for shoot development in rice.
Ito, M., N. Sentoku, A. Nishimura, S.K. Hong, Y. Sato and M. Matsuoka
Breeding Science 2003  53  245-253
Roles of rice GL2-type homeobox genes in epidermis differentiation.
Ito,M., Sentoku,N., Nishimura,A., Hong,S.K., Sato,Y. and Matsuoka,M.
Plant J. 2002  29(4)  497-507
Position dependent expression of GL2-type homeobox gene, Roc1: significance for protoderm differentiation and radial pattern formation in early rice embryogenesis.
DB Reference
Gramene ID GR:0061416
Ontologies
Gene Ontology response to brassinosteroid stimulus( GO:0009741 )
transcription factor activity( GO:0003700 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
sequence-specific DNA binding( GO:0043565 )
Trait Ontology leaf shape( TO:0000492 )
embryo related trait( TO:0000064 )
brassinosteroid sensitivity( TO:0002677 )
Plant Ontology plant embryo( PO:0009009 )
vascular leaf( PO:0009025 )
Related Strains
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Phenotype images
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Last updated
Nov 29, 2023

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