Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol TMS5
Gene Symbol Synonym tms5, NAC18, ONAC023, ONAC23, NAC23, TMS5/ONAC023, OsEnS-30
CGSNL Gene Name THERMOSENSITIVE MALE STERILITY 5
Gene Name Synonym thermosensitive male sterility5, NAC domain-containing protein 18, NAC domain-containing protein 023, NAC domain-containing protein 23, endosperm-specific gene 30
Protein Name NAC DOMAIN-CONTAINING PROTEIN 23
Allele
Chromosome No. 2
Explanation Thermo-sensitive genic male-sterility gene, being located on chromosome 2 flanked by STS marker C365-1 and CAPs marker G227-1. ONAC023, a member of the NAC (NAM-ATAFCUC-related) gene family, was identified as the candidate of the tms5 gene (Yang et al. 2007). LOC_Os02g12310.
Trait Class Reproductive organ - Pollination, fertilization, fertility - Male sterility
Character as QTL - Yield and productivity
Other
Expression
Sequence/Locus
cDNA Accession No. AK107283
MSU ID LOC_Os02g12310.1
RAP ID Os02g0214500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Huang X., Yang S., Gong J., Zhao Q., Feng Q., Zhan Q., Zhao Y., Li W., Cheng B., Xia J., Chen N., Huang T., Zhang L., Fan D., Chen J., Zhou C., Lu Y., Weng Q., Han B.
Nature 2016  537(7622)  629-633
Genomic architecture of heterosis for yield traits in rice.
Zhou H., Zhou M., Yang Y., Li J., Zhu L., Jiang D., Dong J., Liu Q., Gu L., Zhou L., Feng M., Qin P., Hu X., Song C., Shi J., Song X., Ni E., Wu X., Deng Q., Liu Z., Chen M., Liu Y.G., Cao X., Zhuang C.
Nat Commun 2014  5  4884
RNase Z(S1) processes UbL40 mRNAs and controls thermosensitive genic male sterility in rice.
Nie D.M., Ouyang Y.D., Wang X., Zhou W., Hu C.G., Yao J.
Gene 2013  530(2)  236-47
Genome-wide analysis of endosperm-specific genes in rice.
Nuruzzaman M., Sharoni A.M., Satoh K., Moumeni A., Venuprasad R., Serraj R., Kumar A., Leung H., Attia K., Kikuchi S.
Mol. Genet. Genomics 2012  287(5)  389-410
Comprehensive gene expression analysis of the NAC gene family under normal growth conditions, hormone treatment, and drought stress conditions in rice using near-isogenic lines (NILs) generated from crossing Aday Selection (drought tolerant) and IR64.
Shen H., Yin Y., Chen F., Xu Y., Richard A. Dixon
Bioenerg. Res. 2009  2  217–232
A Bioinformatic Analysis of NAC Genes for Plant Cell Wall Development in Relation to Lignocellulosic Bioenergy Production
Fang Y., You J., Xie K., Xie W., Xiong L.
Mol. Genet. Genomics 2008  280(6)  547-63
Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice.
Yang, Q., Liang, C., Zhuang, W., Li, J., Deng, H., Deng, Q. and Wang, B.
Planta. 2007  225 (2)  321-330
Characterization and identification of the candidate gene of rice thermo-sensitive genic male sterile gene tms5 by mapping
Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S.
DNA Res. 2003  10(6)  239-47
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
Wang, Y.G., Q.H. Xing, Q.Y. Deng, F.S. Liang, L.P. Yuan, M.L. Wang, and B. Wang
Theor. Appl. Genet. 2003  107  917-921
Fine mapping of the rice thermo-sensitive genic male-sterile gene tms5.
TextPresso Search Search textpresso for TMS5 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to temperature stimulus( GO:0009266 )
multicellular organismal development( GO:0007275 )
Trait Ontology grain yield( TO:0000396 )
plant height( TO:0000207 )
seed set percent( TO:0000455 )
grain yield per plant( TO:0000449 )
genic male sterility-thermo sensitive( TO:0000067 )
Plant Ontology -
Related Strains
-
Phenotype images
-
Last updated
Feb 23, 2017


/rice/oryzabase