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Basic Information
CGSNL Gene Symbol PI3
Gene Symbol Synonym Pi3, Pi5, Pi-3(t), Pi-3, Pi3(t), Pi5(t), Pi5-1, Pii, RMg22, RMg21
Gene Name Synonym Pyricularia oryzae resistance 3, Magnaporthe grisea resistance-3, Blast resistance 3
Protein Name
Chromosome No. 9
Explanation resistant to several races of Pyricularia grisea. [RGN13:15]. PO:0009025; leaf. GRO:0007049; 03-tillering stage ; GRO:0007047; 02-seedling. Pi5 locus was previously reported to be linked to the RG788 on chromosome 4. Pi3(t) and Pi5(t) are the same resistance gene. Original line is Pai-Kan-Tao (Japonica). The two NB-LRR genes Pi5-1 and Pi5-2 are required for rice Pi5-mediated resistance to M. oryzae (Lee et al. 2009). EU869185 = Pi5-1, EU869186 = Pi5-2. AB820896 (Oryza sativa Japonica cv. Hitomebore). Nipponbare is known to lack Pii. Scrutiny of Os09g0327600 from Nipponbare showed that this gene encodes a truncated R-protein that is likely to be nonfunctional. The Nipponbare Os09g0327600 gene seems to have lost R-gene function by truncation of the region corresponding to the C-terminus of the protein.
Trait Class Tolerance and resistance - Disease resistance
cDNA Accession No. AK110932
MSU ID LOC_Os09g15840.1
RAP ID Os09g0327575/Os09g0327600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Yadav M.K., S A., Ngangkham U., Shubudhi H.N., Bag M.K., Adak T., Munda S., Samantaray S., Jena M.
PLoS ONE 2017  12(4)  e0176236
Use of molecular markers in identification and characterization of resistance to rice blast in India.
Fujisaki K., Abe Y., Ito A., Saitoh H., Yoshida K., Kanzaki H., Kanzaki E., Utsushi H., Yamashita T., Kamoun S., Terauchi R.
Plant J. 2015  83(5)  875-87
Rice Exo70 interacts with a fungal effector, AVR-Pii, and is required for AVR-Pii-triggered immunity.
Miah G., Rafii M.Y., R .Ismail M., B. Puteh A., A. Rahim H., Asfaliza R., A. Latif M.
Mol. Biol. Rep. 2013  40(3)  2369-88
Blast resistance in rice: a review of conventional breeding to molecular approaches
Takagi H., Uemura A., Yaegashi H., Tamiru M., Abe A., Mitsuoka C., Utsushi H., Natsume S., Kanzaki H., Matsumura H., Saitoh H., Yoshida K., Cano L.M., Kamoun S., Terauchi R.
New Phytol. 2013  200(1)  276-83
MutMap-Gap: whole-genome resequencing of mutant F2 progeny bulk combined with de novo assembly of gap regions identifies the rice blast resistance gene Pii.
Luo,S., Zhang,Y., Hu,Q., Chen,J., Li,K., Lu,C., Liu,H., Wang,W. and Kuang,H.
Plant Physiol. 2012  159(1)  197-210
Dynamic Nucleotide-Binding-Site and Leucine-Rich-Repeat- encoding Genes in the Grass Family
Sharma T.R., Rai A.K., Gupta S.K., Vijayan J., Devanna B.N., Ray S.
Agric Res 2012  1  37-52
Rice Blast Management Through Host-Plant Resistance: Retrospect and Prospects
Telebanco-Yanoria M.J., Koide Y., Fukuta Y., Imbe T., Kato H., Tsunematsu H., Kobayashi N.
Breed. Sci. 2010  60  629-638
Development of near-isogenic lines of Japonica-type rice variety Lijiangxintuanheigu as differentials for blast resistance
Lee,S.K., Song,M.Y., Seo,Y.S., Kim,H.K., Ko,S., Cao,P.J., Suh,J.P., Yi,G., Roh,J.H., Lee,S., An,G., Hahn,T.R., Wang,G.L., Ronald,P. and Jeon,J.S.
Genetics 2009  181(4)  1627-1638
Rice Pi5-Mediated Resistance to Magnaporthe oryzae Requires the Presence of Two Coiled-Coil-Nucleotide-Binding-Leucine-Rich Repeat Genes
Koide Y., Kobayashi N., Xu D., Fukuta Y.
JARQ 2009  43  255-280
Resistance Genes and Selection DNA Markers for Blast Disease in Rice (Oryza sativa L.)
Soon-Wook Kwon, Young-Chan Cho, Yeon-Gyu Kim, Jung-Pil Suh, Ji-Ung Jeung, Jae-Hwan Roh, Sang-Kyu Lee, Jong-Seong Jeon, Sae-Jun Yang, Young-Tae Lee
Mol. Cells 2008  25(3)  407-16
Development of near-isogenic Japonica rice lines with enhanced resistance to Magnaporthe grisea.
Ballini E., Morel J.B., Droc G., Price A., Courtois B., Notteghem J.L., Tharreau D.
Mol. Plant Microbe Interact. 2008  21(7)  859-68
A genome-wide meta-analysis of rice blast resistance genes and quantitative trait loci provides new insights into partial and complete resistance.
Cho Y.C., Kwon S.W., Choi I.S., Lee S.K., Jeon J.S., Oh M.K., Roh J.H., Hwang H.G., Yang S.J., Kim Y.G.
J. Crop Sci. Biotech. 2007  10  265-276
Identification of Major Blast Resistance Genes in Korean Rice Varieties (Oryza sativa L.) Using Molecular Markers
Qu,S., Liu,G., Zhou,B., Bellizzi,M., Zeng,L., Dai,L., Han,B. and Wang,G.L.
Genetics 2006  172(3)  1901-1914
The broad-spectrum blast resistance gene pi9 encodes a nucleotide-binding site-leucine-rich repeat protein and is a member of a multigene family in rice.
Yi G., Lee S.K., Hong Y.K., Cho Y.C., Nam M.H., Kim S.C., Han S.S., Wang G.L., Hahn T.R., Ronald P.C., Jeon J.S.
Theor. Appl. Genet. 2004  109(5)  978-85
Use of Pi5(t) markers in marker-assisted selection to screen for cultivars with resistance to Magnaporthe grisea.
PAN Qing-Hua, HU Zhen-Di, Tanisaka TAKATOSHI, WANG Ling
Acta Bot. Sin. 2003  45(7)  871-877
Fine Mapping of the Blast Resistance Gene Pi15, Linked to Pii, on Rice Chromosome 9
Muralidharan, K., D. Krishnaveni, G.S. Laha, C.S. Reddy, M. Srinivasprasad and R. Sridhar
RGN 2003  20  94-96
Evaluation of blast resistance genes in India.
Jeon JS, Chen D, Yi GH, Wang GL, Ronald PC.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2003  269(2)  280-289
Genetic and physical mapping of Pi5(t), a locus associated with broad-spectrum resistance to rice blast.
Ramalingam J, Vera Cruz C, Kukreja K, Chittoorr JM, Wu JL, Lee SW, Baraoidan M, George ML, Cohen MB, Hulbert SH, Leach JE, Leung H.
Mol. Plant Microbe Interact. 2003  16(1)  14-24
Candidate defense genes from rice, barley, and maize and their association with qualitative and quantitative resistance in rice.
Babujee L., Gnanamanickam S.S.
Curr. Sci. 2000  78  248-257
Molecular tools for characterization of rice blast pathogen (Magnaporthe grisea) population and molecular marker-assisted breeding for disease resistance
Inukai, T. and A. Sako
Breeding Science 1997  47(Suppl. 1)  268
Determination of chromosomal location of blast resistance gene in West African upland cultivar Moroberekan.
Chen, D., G.L. Wang and P.C. Ronald
RGN 1997  14  95-98.
Location of the rice blast resistance locus Pi5(t) in Moroberekan by AFLP bulk segregant analysis.
Iwata, N.
RGN 1996  13  12-18
I. Registration of new gene symbols (New system)
Inukai, T., R.S. Zeigler, S. Sarkarung, M. Bronson, L.V. Dung, T. Kinoshita and R.J. Nelson
Theor. Appl. Genet. 1996  93  560-567.
Development of pre-isogenic lines for rice blast-resistance by marker-aided selection from a recombinant inbred population.
Inukai, T., R.J. Nelson, R.S. Zeigler, S. Sarkarung, D.J. Mackill, J.M. Bonman, I. Takamure and T. Kinoshita
Rice Genetics III. IRRI, Manila, Philippines. 1996    447-450.
Genetic analysis of blast resistance in tropical rice cultivars using near-isogenic lines.
Kinoshita, T.
RGN 1995  12  9-24
I. New gene symbols registered.
Inukai, T., R.J. Nelson, R.S. Zeigler, S. Sarkarung, D.J. Mackill, J.M. Bonman, I. Takamure and T. Kinoshita
Phytopathology 1994  84  1278-1283.
Allelism of blast resistance genes in near-isogenic lines of rice.
Wang, G.L., D.J. Mackill, J.M. Bonman, S.R. McCouch, M.C. Champoux and R.J. Nelson
Genetics 1994  136  1421-1434.
RFLP mapping of genes conferring complete and partial resistance to blast in a durably resistance rice cultivar.
Kinoshita T., Inukai T., Toriyama K.
RGN 1994  11  16-17
IV. Reports from coordinators 1) Gene symbols for blast resistance newly revised
Inukai T., Nelson R.J.
The Crop Science Society of Japan, Hokkaido danwakai kaihou 1994  35  54-55
Mapping for blast resistance gene Pi-3 derived from rice cultivar Pai-kan-tao.
Causse, M.A., T.M. Fulton, Y.G. Cho, S.N. Ahn, J. Chunwongse, K. Wu, J. Xiao, Z. Yu, P.C. Ronald, S.E. Harrington, G. Second, S.R. McCouch and S.D. Tanksley
Genetics 1994  138  1251-1274.
Saturated molecular map of the rice genome based on an interspecific backcross population.
Inukai, T., D.J. Mackill, J.M. Bonman, S. Sarkarung, R. Zeigler, R. Nelson, I. Takamure and T. Kinoshita
RGN 1992  9  94-95..
A blast resistance gene Pi-3(t) in near-isogenic line C104PKT.
Mackill, D.J. and J.M.Bonman
Phytopathology 1992  82  746-749.
Inheritance of blast resistance in near-isogenic lines of rice.
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DB Reference
Gramene ID GR:0060631 GR:0060632
Gene Ontology response to fungus( GO:0009620 )
ADP binding( GO:0043531 )
defense response( GO:0006952 )
Trait Ontology leaf blast disease resistance( TO:0000500 )
panicle blast disease resistance( TO:0000477 )
leaf blast disease resistance( TO:0000468 )
blast disease( TO:0000074 )
potassium chlorate resistance( TO:0000502 )
Plant Ontology vascular leaf( PO:0009025 )
Related Strains
Phenotype images
Last updated
May 25, 2020