Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | NY2 |
| Gene Symbol Synonym | OsNY2 |
| CGSNL Gene Name | _ |
| Gene Name Synonym | |
| Protein Name | |
| Allele | ny2 |
| Chromosome No. | 7 |
| Explanation | a eukaryotic translation initiation factor 3 subunit E. GO:0071540: eukaryotic translation initiation factor 3 complex, eIF3e. |
| Trait Class |
Vegetative organ - Culm
Reproductive organ - panicle Reproductive organ - Pollination, fertilization, fertility - Male sterility Character as QTL - Yield and productivity |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. | - |
| MSU ID |
LOC_Os07g32040.1
|
| RAP ID |
Os07g0503700 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
- |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
|
Kamara N., Jiao Y., Huang W., Cao L., Zhu L., Zhao C., Huang X., Shivute F.N., Liu X., Wu J., Shahid M.Q.
Front Plant Sci 2023 14 1229870 Comparative cytological and transcriptome analyses of <i>ny2</i> mutant delayed degeneration of tapetal cells and promotes abnormal microspore development in neo-tetraploid rice.
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Kamara N., Jiao Y., Lu Z., Aloryi K.D., Wu J., Liu X., Shahid M.Q.
Int J Mol Sci 2021 22(2) Cytological Observations and Bulked-Segregant Analysis Coupled Global Genome Sequencing Reveal Two Genes Associated with pollen Fertility in Tetraploid Rice.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
formation of translation initiation complex( GO:0001732 )
translation initiation factor activity( GO:0003743 ) nucleus( GO:0005634 ) eukaryotic translation initiation factor 3 complex( GO:0005852 ) eukaryotic 48S preinitiation complex( GO:0033290 ) eukaryotic 43S preinitiation complex( GO:0016282 ) meristem maintenance( GO:0010073 ) pollen development( GO:0009555 ) meiotic cell cycle( GO:0051321 ) anther development( GO:0048653 ) tapetal layer development( GO:0048658 ) microsporogenesis( GO:0009556 ) |
| Trait Ontology |
pollen fertility( TO:0000421 )
plant height( TO:0000207 ) panicle length( TO:0000040 ) panicle number( TO:0000152 ) grain number per plant( TO:0000440 ) 1000-seed weight( TO:0000382 ) filled grain number( TO:0000447 ) seed set percent( TO:0000455 ) grain yield( TO:0000396 ) pollen abortion type( TO:0000218 ) male sterility( TO:0000437 ) |
| Plant Ontology |
pollen development stage( PO:0001007 )
anther development stage( PO:0001004 ) |
| Related Strains | |
| - | |
| Phenotype images | |
| - | |
| Last updated | |
| Nov 20, 2023 | |
