Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol HIPL1
Gene Symbol Synonym OsHIPL1
CGSNL Gene Name HEDGEHOG-INTERACTING PROTEIN-LIKE 1 PROTEIN
Gene Name Synonym hedgehog-interacting protein-like 1 protein
Protein Name HEDGEHOG-INTERACTING PROTEIN-LIKE 1 PROTEIN
Allele Oshipl1, Oshipl1a, Oshipl1b, Oshipl1c
Chromosome No. 3
Explanation a causal gene of the major QTL qSV3 for rice seed vigour. TO:0000931: seed quality trait.
Trait Class Vegetative organ - Root
Seed - Physiological traits
Character as QTL - Germination
Expression
Sequence/Locus
cDNA Accession No. AK073577
MSU ID LOC_Os03g48540.1
RAP ID Os03g0691800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
He Y., Chen S., Liu K., Chen Y., Cheng Y., Zeng P., Zhu P., Xie T., Chen S., Zhang H., Cheng J.
Plant Biotechnol. J. 2022  20(7)  1346-1362
OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology plasma membrane( GO:0005886 )
nucleus( GO:0005634 )
positive regulation of seed germination( GO:0010030 )
response to abscisic acid stimulus( GO:0009737 )
abscisic acid mediated signaling( GO:0009738 )
negative regulation of abscisic acid biosynthetic process( GO:0090359 )
abscisic acid catabolic process( GO:0046345 )
abscisic acid metabolic process( GO:0009687 )
regulation of abscisic acid mediated signaling( GO:0009787 )
Trait Ontology vigor related trait( TO:0000250 )
abscisic acid content( TO:0002667 )
abscisic acid sensitivity( TO:0000615 )
root length( TO:0000227 )
basal internode diameter( TO:0000132 )
Plant Ontology 0 seed germination stage( PO:0007057 )
root( PO:0009005 )
Related Strains
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Phenotype images
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Last updated
Aug 24, 2022

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