Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol CHZ1
Gene Symbol Synonym OsChz1
CGSNL Gene Name Chaperone for H2A.Z-H2B 1
Gene Name Synonym CHZ-domain protein 1
Protein Name Chaperone for H2A.Z-H2B 1
Allele oschz1, oschz1-1, oschz1-2
Chromosome No.
Explanation yeast Chz1 homolog. The RNA-seq, ChIP-seq, MNase-seq, and BS-seq data that support the findings of this study have been deposited to NCBI GEO with the accession number GSE155269. Structural factors and coordinates have been deposited in the Protein Data Bank (PDB) with accession code 6M2M for the OsChz1-H2A-H2B complex. GO:1902275: regulation of chromatin organization. TO:0000975: grain width.
Trait Class Vegetative organ - Culm
Reproductive organ - Heading date
Reproductive organ - panicle
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Expression
Sequence/Locus
cDNA Accession No. AK108583
AK064128
MSU ID LOC_Os11g34190.1
RAP ID Os11g0544600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
References
Du K., Luo Q., Yin L., Wu J., Liu Y., Gan J., Dong A., Shen W.H.
Nat Commun 2020  11(1)  5717
OsChz1 acts as a histone chaperone in modulating chromatin organization and genome function in rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology circadian rhythm( GO:0007623 )
regulation of short-day photoperiodism, flowering( GO:0048587 )
regulation of long-day photoperiodism, flowering( GO:0048586 )
chromatin organization( GO:0006325 )
nucleus( GO:0005634 )
Trait Ontology growth and development trait( TO:0000357 )
days to heading( TO:0000137 )
flowering time( TO:0002616 )
plant height( TO:0000207 )
grain size( TO:0000397 )
panicle length( TO:0000040 )
tiller number( TO:0000346 )
filled grain number( TO:0000447 )
Plant Ontology inflorescence development stage( PO:0001083 )
Related Strains
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Phenotype images
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Last updated
May 24, 2021

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