Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | DU13 |
| Gene Symbol Synonym | OsDLN175, DLN175, OsSE, SE, OsDU13, ZOS6-09, OsZOS6-09 |
| CGSNL Gene Name | DULL 13 |
| Gene Name Synonym | DLN repressor 175, DLN motif protein 175, SERRATE, Dull endosperm 13, zinc-finger protein TFIIIA class of Oryza sativa 6-09, ZPT of Oryza sativa 6-09 |
| Protein Name | ZINC-FINGER PROTEIN TFIIIA CLASS OF ORYZA SATIVA 6-09 |
| Allele | du13 |
| Chromosome No. | 6 |
| Explanation | PO:0030123: panicle inflorescence. TO:0001069: cooking quality trait. |
| Trait Class |
Vegetative organ - Culm
Reproductive organ - panicle Seed - Physiological traits - Storage substances Character as QTL - Grain quality |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK120947
|
| MSU ID |
LOC_Os06g48530.1
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| RAP ID |
Os06g0698859 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Borna R.S., Murchie E.H., Pyke K.A., Roberts J.A., González-Carranza ZH.
Plant Biotechnol. J. 2022 20(2) 297-309 The rice EP3 and OsFBK1 E3 ligases alter plant architecture and flower development, and affect transcript accumulation of microRNA pathway genes and their targets.
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Cai Y., Zhang W., Fu Y., Shan Z., Xu J., Wang P., Kong F., Jin J., Yan H., Ge X., Wang Y., You X., Chen J., Li X., Chen W., Chen X., Ma J., Tang X., Zhang J., Bao Y., Jiang L., Wang H., Wan J.
Plant Biotechnol. J. 2022 20(7) 1387-1401 Du13 encodes a C2 H2 zinc-finger protein that regulates Wxb pre-mRNA splicing and microRNA biogenesis in rice endosperm.
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Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019 20(7) Analysis of Rice Proteins with DLN repressor Motif/S.
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Agarwal P., Arora R., Ray S., Ashok K Singh, Vijay P Singh, Takatsuji H., Kapoor S., Akhilesh K Tyagi
Plant Mol. Biol. 2007 65(4) 467-85 Genome-wide identification of C2H2 zinc-finger gene family in rice and their phylogeny and expression analysis.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
mRNA processing( GO:0006397 )
nucleic acid binding( GO:0003676 ) nuclear mRNA splicing, via spliceosome( GO:0000398 ) alternative nuclear mRNA splicing, via spliceosome( GO:0000380 ) production of miRNAs involved in gene silencing by miRNA( GO:0035196 ) nucleus( GO:0005634 ) |
| Trait Ontology |
dull endosperm( TO:0000105 )
amylose content( TO:0000196 ) seed size( TO:0000391 ) grain size( TO:0000397 ) grain weight( TO:0000590 ) plant height( TO:0000207 ) panicle length( TO:0000040 ) tiller number( TO:0000346 ) total fat content( TO:0000602 ) breakdown viscosity( TO:0000374 ) peak viscosity( TO:0000409 ) |
| Plant Ontology |
endosperm( PO:0009089 )
root( PO:0009005 ) leaf( PO:0025034 ) leaf sheath( PO:0020104 ) stem( PO:0009047 ) inflorescence( PO:0009049 ) seed development stage( PO:0001170 ) |
| Related Strains | |
| - | |
| Phenotype images | |
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| Last updated | |
| Jul 25, 2024 | |
