Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | PINE1 |
| Gene Symbol Synonym | OsPINE1, DLN266, OsDLN266, DEC1, OsDEC1, HSTL, OsHSTL |
| CGSNL Gene Name | PREMATURE INTERNODE ELONGATION 1 |
| Gene Name Synonym | DLN repressor 266, DLN motif protein 266, DECELERATOR OF INTERNODE ELONGATION 1, heat stress tolerance like |
| Protein Name | |
| Allele | hstl 3, hstl3-1, hstl12, hstl 12-1 |
| Chromosome No. | 12 |
| Explanation | zinc-finger transcription factor. a Cys2 /His2 zinc finger protein. GO:1901001: negative regulation of response to salt stress. GO:0098869: cellular oxidant detoxification. |
| Trait Class |
Vegetative organ - Culm
Vegetative organ - Root Reproductive organ - Heading date Tolerance and resistance - Stress tolerance |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. | - |
| MSU ID |
LOC_Os12g42250.1
|
| RAP ID |
Os12g0617000 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
- |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Wang C., Cheng Z., Zhou M., Lu Z., Jiang Q., Lu K., Zhu C., Ding Y.
Rice (N Y) 2025 18(1) 92 Rice Transcription Factor HSTL Regulates plant height and Salt Stress Response by Modulating Gibberellin Homeostasis.
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Wei S., Tanaka R., Kawakatsu T., Teramoto S., Tanaka N., Shenton M., Uga Y., Yabe S.
Rice (N Y) 2023 16(1) 55 Genome- and Transcriptome-wide Association Studies to Discover Candidate Genes for Diverse Root Phenotypes in Cultivated Rice.
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Nagai K., Mori Y., Ishikawa S., Furuta T., Gamuyao R., Niimi Y., Hobo T., Fukuda M., Kojima M., Takebayashi Y., Fukushima A., Himuro Y., Kobayashi M., Ackley W., Hisano H., Sato K., Yoshida A., Wu J., Sakakibara H., Sato Y., Tsuji H., Akagi T., Ashikari M.
Nature 2020 584(7819) 109-114 Antagonistic regulation of the gibberellic acid response during stem growth in rice.
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Jorge Gómez-Ariza, Brambilla V., Vicentini G., Landini M., Cerise M., Carrera E., Shrestha R., Chiozzotto R., Galbiati F., Caporali E., Isabel López Díaz, Fornara F.
Nat Plants 2019 5(4) 358-362 A transcription factor coordinating internode elongation and photoperiodic signals in rice.
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Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019 20(7) Analysis of Rice Proteins with DLN repressor Motif/S.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
response to gibberellin stimulus( GO:0009739 )
regulation of photoperiodism, flowering( GO:2000028 ) internode patterning( GO:0080006 ) response to deep water( GO:0030912 ) nucleic acid binding( GO:0003676 ) response to salt stress( GO:0009651 ) regulation of gibberellin biosynthetic process( GO:0010371 ) gibberellin metabolic process( GO:0009685 ) gibberellic acid mediated signaling( GO:0009740 ) response to oxidative stress( GO:0006979 ) |
| Trait Ontology |
internode length( TO:0000145 )
days to heading( TO:0000137 ) flowering time( TO:0002616 ) gibberellic acid sensitivity( TO:0000166 ) plant height( TO:0000207 ) lodging incidence( TO:0000068 ) root anatomy and morphology trait( TO:0000043 ) root length( TO:0000227 ) salt tolerance( TO:0006001 ) stem elongation( TO:0006036 ) gibberellic acid content( TO:0002675 ) proline content( TO:0006002 ) sodium content( TO:0000608 ) relative water content( TO:0000136 ) hydrogen peroxide content( TO:0000605 ) seedling height( TO:0000019 ) node number( TO:0000634 ) relative root length( TO:0000516 ) relative plant height( TO:0001034 ) oxidative stress( TO:0002657 ) |
| Plant Ontology |
stem elongation stage( PO:0007089 )
leaf( PO:0025034 ) stem node( PO:0020141 ) stem( PO:0009047 ) |
| Related Strains | |
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| Phenotype images | |
| - | |
| Last updated | |
| Dec 20, 2025 | |
