Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SC35A
Gene Symbol Synonym Os-SC34, OsSC34, SC34, Os-SC35a, OsSC35a, RRM1-163, OsRRM1-163
CGSNL Gene Name _
Gene Name Synonym SC subfamily protein 35a, RNA recognition motif domain protein 1-163
Protein Name _
Allele
Chromosome No. 6
Explanation LOC_Os08g37960. Os-SC34 in Barta et al. 2010, Dong et al. 2018.
Trait Class Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os08g37960.1
LOC_Os08g37960.2
LOC_Os08g37960.3
RAP ID Os08g0486200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Jiang X., Yu S., Huang Y., Huang J., Liu S., Yang D., Fu J., He H., Fu H.
PeerJ 2024  12  e17668
Identification of the <i>RRM1</i> gene family in rice (<i>Oryza sativa</i>) and its response to rice blast.
Dong C., He F., Berkowitz O., Liu J., Cao P., Tang M., Shi H., Wang W., Li Q., Shen Z., Whelan J., Zheng L.
Plant Cell 2018  30(10)  2267-2285
Alternative Splicing Plays a Critical Role in Maintaining Mineral Nutrient Homeostasis in Rice (<i>Oryza sativa</i>).
Barta A., Kalyna M., Reddy A.S.N.
Plant Cell 2010  22(9)  2926-2929
Implementing a rational and consistent nomenclature for serine/arginine-rich protein splicing factors (SR proteins) in plants.
Isshiki M, Tsumoto A, Shimamoto K.
Plant Cell 2006  18(1)  146-58
The serine/arginine-rich protein family in rice plays important roles in constitutive and alternative splicing of pre-mRNA.
DB Reference
Gramene ID -
Ontologies
Gene Ontology cytoplasm( GO:0005737 )
nuclear speck( GO:0016607 )
RNA binding( GO:0003723 )
nuclear mRNA cis splicing, via spliceosome( GO:0045292 )
regulation of alternative nuclear mRNA splicing, via spliceosome( GO:0000381 )
nucleus( GO:0005634 )
response to starvation( GO:0042594 )
Trait Ontology -
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jan 14, 2025

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