Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol NAC6
Gene Symbol Synonym OsNAC6, ONAC048, NAC48, SNAC2, SNAC2/OsNAC6, OsNAC6/ONAC048, OsSNAC2, SNAC-2, OsSNAC-2
Gene Name Synonym NAC 6, OsNac gene-6, O. sativa gene with the NAC domain 6, OsNAC6 protein, NAC domain-containing protein 48, stress-responsive NAC transcription factor SNAC2, stress-responsive NAC transcription factor 2
Chromosome No. 1
Explanation AB028185. AU162697, AU056522. BF889475. Q7F2L3. This gene controls the formation of shoot apical meristem, organ separation and flower morphogenesis. GO:2000280: regulation of root development.
Trait Class Vegetative organ - Shoot apical meristem(SAM)
Tolerance and resistance - Disease resistance
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
cDNA Accession No. AK067906
MSU ID LOC_Os01g66120.1
RAP ID Os01g0884300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Salsinha Y.C.F., Rini D.S., Indradewa D., Rachmawati D., Alam T., Purwestri Y.A.
Front Plant Sci 2023  14  1210241
Exogenously applied <i>Casuarina equisetifolia</i> leaf extracts act as an osmoprotectant on proline accumulation under drought stress in local rice from Indonesia.
Zhang J., Sun Y., Zhou Z., Zhang Y., Yang Y., Zan X., Li X., Wan J., Gao X., Chen R., Huang Z., Li L., Xu Z.
Sci Rep 2022  12(1)  8385
OsSCL30 overexpression reduces the tolerance of rice seedlings to low temperature, drought and salt.
Qu X., Zou J., Wang J., Yang K., Wang X., Le J.
Int J Mol Sci 2022  23(11) 
A Rice R2R3-Type MYB Transcription Factor OsFLP Positively Regulates Drought Stress Response via OsNAC.
Park J.R., Kim E.G., Jang Y.H., Jan R., Farooq M., Ubaidillah M., Kim K.M.
Front Plant Sci 2022  13  850441
Applications of CRISPR/Cas9 as New Strategies for Short Breeding to Drought Gene in Rice.
Mohanty B.
Front Genet 2021  12  639654
Promoter Architecture and Transcriptional Regulation of Genes Upregulated in Germination and Coleoptile Elongation of Diverse Rice Genotypes Tolerant to Submergence.
El-Esawi MA., Alayafi A.A.
Genes (Basel) 2019  10(1) 
Overexpression of Rice <i>Rab7</i> Gene Improves Drought and heat tolerance and Increases grain yield in Rice (<i>Oryza sativa</i> L.).
Sharma G., Upadyay A.K., Biradar H., Sonia, Hittalmani S.
J. Genet. 2019  98 
OsNac-like transcription factor involved in regulating seed-storage protein content at different stages of grain filling in rice under aerobic conditions.
Yao L., Cheng X., Gu Z., Huang W., Li S., Wang L., Wang Y.F., Xu P., Ma H., Ge X.
Plant Cell 2018  30(6)  1258-1276
The AWPM-19 Family Protein OsPM1 Mediates Abscisic Acid Influx and Drought Response in Rice.
Park Y.C., Chapagain S., Jang C.S.
Plant Cell Physiol. 2018  59(3)  575-589
A Negative Regulator in Response to Salinity in Rice: Oryza sativa Salt-, ABA- and Drought-Induced RING Finger Protein 1 (OsSADR1).
Moin M., Bakshi A., Madhav M.S., Kirti P.B.
Front Chem 2017  5  97
Expression Profiling of Ribosomal Protein Gene Family in Dehydration Stress Responses and Characterization of Transgenic Rice Plants Overexpressing <i>RPL23A</i> for Water-Use Efficiency and Tolerance to Drought and Salt Stresses.
Leng Y., Yang Y., Ren D., Huang L., Dai L., Wang Y., Chen L., Tu Z., Gao Y., Li X., Zhu L., Hu J., Zhang G., Gao Z., Guo L., Kong Z., Lin Y., Qian Q., Zeng D.
Plant Physiol. 2017   
A rice pectate lyase-LIKE gene is required for plant growth and leaf senescence.
Manimaran P., Venkata Reddy S., Moin M., Raghurami Reddy M., Yugandhar P., Mohanraj S.S., Balachandran S.M., Kirti P.B.
Sci Rep 2017  7(1)  9341
Activation-tagging in indica rice identifies a novel transcription factor subunit, NF-YC13 associated with salt tolerance.
Lee D.K., Chung P.J., Jeong J.S., Jang G., Bang S.W., Jung H., Kim Y.S., Ha S.H., Choi Y.D., Kim J.K.
Plant Biotechnol. J. 2016   
The rice OsNAC6 transcription factor orchestrates multiple molecular mechanisms involving root structural adaptions and nicotianamine biosynthesis for drought tolerance.
Ghosh T., Rai M., Tyagi W., Challam C.
Plant Signal Behav 2016  11(5)  e1138192
Seedling stage low temperature response in tolerant and susceptible rice genotypes suggests role of relative water content and members of OsSNAC gene family.
Kakar K.U., Ren X.L., Nawaz Z., Cui Z., Li B., Xie G., Hassan M.A., Ali E., Sun G.
Plant Biol (Stuttg) 2015   
Consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
Cai W., Liu W., Wang W.S., Fu Z.W., Han T.T., Lu Y.T.
PLoS ONE 2015  10(6)  e0131599
Overexpression of Rat Neurons nitric oxide synthase in Rice Enhances Drought and Salt Tolerance.
Yang Y.W., Chen H.C., Jen W.F., Liu L.Y., Chang M.C.
PLoS ONE 2015  10(7)  e0131391
Comparative Transcriptome Analysis of Shoots and Roots of TNG67 and TCN1 Rice Seedlings under Cold Stress and Following Subsequent Recovery: Insights into Metabolic Pathways, Phytohormones, and Transcription Factors.
Wei S., Hu W., Deng X., Zhang Y., Liu X., Zhao X., Luo Q., Jin Z., Li Y., Zhou S., Sun T., Wang L., Yang G., He G.
BMC Plant Biol. 2014  14  133
A rice calcium-dependent protein kinase OsCPK9 positively regulates drought stress tolerance and spikelet fertility.
Nakashima K., Jan A., Todaka D., Maruyama K., Goto S., Shinozaki K., Yamaguchi-Shinozaki K.
Planta 2014  239(1)  47-60
Comparative functional analysis of six drought-responsive promoters in transgenic rice.
Wang M., Yu Y., Haberer G., Marri P.R., Fan C., Goicoechea J.L., Zuccolo A., Song X., Kudrna D., Ammiraju J.S., Cossu R.M., Maldonado C., Chen J., Lee S., Sisneros N., de Baynast K., Golser W., Wissotski M., Kim W., Sanchez P., Ndjiondjop M.N., Sanni K., Long M., Carney J., Panaud O., Wicker T., Machado C.A., Chen M., Mayer K.F., Rounsley S., Wing R.A.
Nat. Genet. 2014  46(9)  982-8
The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication.
Garcia-Morales S.a, Gomez-Merino F.C.b, Trejo-Tellez L.I.a
Acta Physiologiae Plantarum 2014  36  1927-1936
NAC transcription factor expression, amino acid concentration and growth of elite rice cultivars upon salt stress
Nuruzzaman M., Sharoni A.M., Kikuchi S.
Front Microbiol 2013  4  248
Roles of NAC transcription factors in the regulation of biotic and abiotic stress responses in plants.
Todaka D., Nakashima K., Maruyama K., Kidokoro S., Osakabe Y., Ito Y., Matsukura S., Fujita Y., Yoshiwara K., Ohme-Takagi M., Kojima M., Sakakibara H., Shinozaki K., Yamaguchi-Shinozaki K.
Proc. Natl. Acad. Sci. U.S.A. 2012  109(39)  15947-52
Rice phytochrome-interacting factor-like protein OsPIL1 functions as a key regulator of internode elongation and induces a morphological response to drought stress.
You J., Hu H., Xiong L.
Plant Sci. 2012  197  59-69
An Ornithine delta-aminotransferase gene OsOAT confers drought and oxidative stress tolerance in rice.
Todaka D., Nakashima K., Shinozaki K., Kazuko Yamaguchi-Shinozaki
Rice (N Y) 2012  5  6
Toward understanding transcriptional regulatory networks in abiotic stress responses and tolerance in rice.
Qin F., Shinozaki K., Kazuko Yamaguchi-Shinozaki
Plant Cell Physiol. 2011  52(9)  1569-82
Achievements and challenges in understanding plant abiotic stress responses and tolerance.
Asano T., Hakata M., Nakamura H., Aoki N., Komatsu S., Ichikawa H., Hirochika H., Ohsugi R.
Plant Mol. Biol. 2011  75(1)  179-191
Functional characterisation of OsCPK21, a calcium-dependent protein kinase that confers salt tolerance in rice.
Takasaki H,Maruyama K,Kidokoro S,Ito Y,Fujita Y,Shinozaki K,Yamaguchi-Shinozaki K,Nakashima K
Mol. Genet. Genomics 2010  284(3)  173-83
The abiotic stress-responsive NAC-type transcription factor OsNAC5 regulates stress-inducible genes and stress tolerance in rice.
Amir Hossain M,Lee Y,Cho JI,Ahn CH,Lee SK,Jeon JS,Kang H,Lee CH,An G,Park PB
Plant Mol. Biol. 2010  72(4-5)  557-66
The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice.
Shen H., Yin Y., Chen F., Xu Y., Richard A. Dixon
Bioenerg. Res. 2009  2  217–232
A Bioinformatic Analysis of NAC Genes for Plant Cell Wall Development in Relation to Lignocellulosic Bioenergy Production
Chung PJ,Kim JK
Plant Signal Behav 2009  4(7)  675-7
Epigenetic interaction of OsHDAC1 with the OsNAC6 gene promoter regulates rice root growth.
Chung PJ,Kim YS,Jeong JS,Park SH,Nahm BH,Kim JK
Plant J. 2009  59  764-76
The histone deacetylase OsHDAC1 epigenetically regulates the OsNAC6 gene that controls seedling root growth in rice.
Hu H, You J, Fang Y, Zhu X, Qi Z, Xiong L.
Plant Mol. Biol. 2008  67(1-2)  169-81
Characterization of transcription factor gene SNAC2 conferring cold and salt tolerance in rice.
Fang Y., You J., Xie K., Xie W., Xiong L.
Mol. Genet. Genomics 2008  280(6)  547-63
Systematic sequence analysis and identification of tissue-specific or stress-responsive genes of NAC transcription factor family in rice.
Nakashima K., Lam-Son P Tran, Dong Van Nguyen, Fujita M., Maruyama K., Todaka D., Ito Y., Hayashi N., Shinozaki K., Kazuko Yamaguchi-Shinozaki
Plant J. 2007  51(4)  617-30
Functional analysis of a NAC-type transcription factor OsNAC6 involved in abiotic and biotic stress-responsive gene expression in rice.
Ohnishi T., Sugahara S., Yamada T., Kikuchi K., Yoshiba Y., Hiro-Yuki Hirano, Tsutsumi N.
Genes Genet. Syst. 2005  80(2)  135-9
OsNAC6, a member of the NAC gene family, is induced by various stresses in rice.
Yamaguchi,T., Nakayama,K., Hayashi,T., Yazaki,J., Kishimoto,N., Kikuchi,S. and Koike,S.
Biosci. Biotechnol. Biochem. 2004  68(6)  1315-1323
cDNA Microarray Analysis of Rice Anther Genes under Chilling Stress at the Microsporogenesis Stage Revealed Two Genes with DNA Transposon Castaway in the 5'-Flanking Region.
Ooka H., Satoh K., Doi K., Nagata T., Otomo Y., Murakami K., Matsubara K., Osato N., Kawai J., Carninci P., Hayashizaki Y., Suzuki K., Kojima K., Takahara Y., Yamamoto K., Kikuchi S.
DNA Res. 2003  10(6)  239-47
Comprehensive analysis of NAC family genes in Oryza sativa and Arabidopsis thaliana.
L Xiong, M W Lee, M Qi, Y Yang
Mol. Plant Microbe Interact. 2001  14(5)  685-92
Identification of defense-related rice genes by suppression subtractive hybridization and differential screening.
Kikuchi,K., Ueguchi-Tanaka,M., Yoshida,K.T., Nagato,Y., Matsusoka,M. and Hirano,H.Y.
Mol. Gen. Genet. 2000  262(6)  1047-1051
Molecular analysis of the NAC gene family in rice.
Kikuchi, K., K.T. Yoshida, Y. Nagato and H.Y. Hirano
RGN 1998  15  160-161
Chromosomal location of the OsNAC genes.
Kikuchi, K., K.T. Yoshida, M. Uekuchi-Tanaka, M. Matsuoka, Y. Nagato and H.Y. Hirano
RGN 1997  14  125-126
Molecular characterization of the rice OsNAC genes.
TextPresso Search Search textpresso for NAC6 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0061485
Gene Ontology response to organic substance( GO:0010033 )
response to deep water( GO:0030912 )
aminoacyl-tRNA ligase activity( GO:0004812 )
nucleus( GO:0005634 )
DNA binding( GO:0003677 )
transcription( GO:0006350 )
response to wounding( GO:0009611 )
negative regulation of abscisic acid mediated signaling( GO:0009788 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
response to abscisic acid stimulus( GO:0009737 )
response to jasmonic acid stimulus( GO:0009753 )
response to cold( GO:0009409 )
response to symbiotic bacterium( GO:0009609 )
response to salicylic acid stimulus( GO:0009751 )
defense response to fungus( GO:0050832 )
root development( GO:0048364 )
nicotianamine biosynthetic process( GO:0030418 )
regulation of transcription( GO:0045449 )
Trait Ontology jasmonic acid sensitivity( TO:0000172 )
root length( TO:0000227 )
blast disease( TO:0000074 )
cold tolerance( TO:0000303 )
abscisic acid sensitivity( TO:0000615 )
drought tolerance( TO:0000276 )
salt tolerance( TO:0006001 )
disease resistance( TO:0000112 )
root number( TO:0000084 )
root anatomy and morphology trait( TO:0000043 )
root development trait( TO:0000656 )
submergence tolerance( TO:0000524 )
Plant Ontology 4 root elongation stage( PO:0001031 )
root development stage( PO:0007520 )
Related Strains
Phenotype images
Last updated
Nov 27, 2023