Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol 2ODD3
Gene Symbol Synonym 2-ODD3, Os2-ODD3, Os2ODD3, OsF3H04g, F3H04g, OsSAH2, SAH2, OsF3H2, F3H2, OsF3H04g/OsSAH2, OsS5H3, S5H3, OsS5H2, S5H2, OsDMR6-2, DMR6-2
CGSNL Gene Name 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 3
Gene Name Synonym 2-oxoglutarate-dependent dioxygenase 3, SA hydroxylase 2, salicylic acid hydroxylase 2, salicylic acid 5-hydroxylase 2, Downy Mildew Resistant 6-2
Protein Name 2-OXOGLUTARATE-DEPENDENT DIOXYGENASE 3
Allele sah2, osf3h04g, oss5h2
Chromosome No. 4
Explanation OsF3H2 in Wang et al. 2022. OsS5H2 in Liu et al. 2023. OsF3H04g acts as susceptible targets of transcription activator-like effectors (TALEs) from Xanthomonas oryzae pv. oryzicola. a Downy Mildew Resistance 6-like (DMR6-like) gene. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. TO:0000975: grain width.
Trait Class Biochemical character
Vegetative organ - Culm
Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK061337
MSU ID LOC_Os04g49194.1
RAP ID Os04g0581000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Liu X., Yu Y., Yao W., Yin Z., Wang Y., Huang Z., Zhou J.Q., Liu J., Lu X., Wang F., Zhang G., Chen G., Xiao Y., Deng H., Tang W.
Plant Biotechnol. J. 2023   
CRISPR/Cas9-mediated simultaneous mutation of three salicylic acid 5-hydroxylase (OsS5H) genes confers broad-spectrum disease resistance in rice.
Wu T., Bi Y., Yu Y., Zhou Z., Yuan B., Ding X., Zhang Q., Chen X., Yang H., Liu H., Chu Z.
Int J Mol Sci 2023  24(17) 
Activated Expression of Rice DMR6-like Gene <i>OsS3H</i> Partially Explores the Susceptibility to Bacterial Leaf Streak Mediated by Knock-Out <i>OsF3H04g</i>.
Liang B., Wang H., Yang C., Wang L., Qi L., Guo Z., Chen X.
Int J Mol Sci 2022  23(3) 
Salicylic Acid Is Required for Broad-Spectrum disease resistance in Rice.
Wang J., Zhang C., Li Y.
Genes (Basel) 2022  13(3) 
Genome-Wide Identification and Expression Profiles of 13 Key Structural Gene Families Involved in the Biosynthesis of Rice Flavonoid Scaffolds.
Wu T., Zhang H., Bi Y., Yu Y., Liu H., Yang H., Yuan B., Ding X., Chu Z.
Int J Mol Sci 2021  22(24) 
Tal2c Activates the Expression of <i>OsF3H04g</i> to Promote Infection as a Redundant TALE of Tal2b in <i>Xanthomonas oryzae</i> pv. <i>oryzicola</i>.
Byeon Y., Back K.
J. Pineal Res. 2015  58(3)  343-51
Molecular cloning of melatonin 2-hydroxylase responsible for 2-hydroxymelatonin production in rice (Oryza sativa).
DB Reference
Gramene ID -
Ontologies
Gene Ontology dioxygenase activity( GO:0051213 )
metal ion binding( GO:0046872 )
salicylic acid catabolic process( GO:0046244 )
response to salicylic acid stimulus( GO:0009751 )
defense response to fungus( GO:0050832 )
defense response to bacterium( GO:0042742 )
salicylic acid mediated signaling pathway( GO:0009863 )
response to jasmonic acid stimulus( GO:0009753 )
response to cold( GO:0009409 )
response to salt stress( GO:0009651 )
regulation of salicylic acid biosynthetic process( GO:0080142 )
salicylic acid metabolic process( GO:0009696 )
cytoplasm( GO:0005737 )
response to molecule of bacterial origin( GO:0002237 )
pattern recognition receptor signaling pathway( GO:0002221 )
respiratory burst during defense response( GO:0002679 )
Trait Ontology bacterial leaf streak disease resistance( TO:0000203 )
blast disease( TO:0000074 )
brown spot disease resistance( TO:0000356 )
bacterial blight disease resistance( TO:0000175 )
jasmonic acid content( TO:0002668 )
cold tolerance( TO:0000303 )
salt tolerance( TO:0006001 )
jasmonic acid sensitivity( TO:0000172 )
growth hormone content( TO:0000476 )
grain length( TO:0000734 )
grain width( TO:0000402 )
grain thickness( TO:0000399 )
1000-seed weight( TO:0000382 )
seed set percent( TO:0000455 )
Plant Ontology shoot system( PO:0009006 )
leaf( PO:0025034 )
leaf sheath( PO:0020104 )
Related Strains
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Phenotype images
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Last updated
Feb 21, 2025

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