Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol FSE6
Gene Symbol Synonym OsGINT1, GINT1, OsFSE6, OsGT64B, GT64B
CGSNL Gene Name FLOURY AND SHRUNKEN ENDOSPERM 6
Gene Name Synonym GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1, floury and shrunken endosperm 6, glycosyltransferase 64B
Protein Name GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE 1
Allele fse6
Chromosome No. 5
Explanation Q53WK1. a rice AtGINT1 homolog. evolutionarily closely related to AtGINT1. Loss of OsGINT1 results in seedling lethality (Ishikawa et al. 2018). PO:0030123: panicle inflorescence.
Trait Class Biochemical character
Seed - Morphological traits - Endosperm
Seed - Morphological traits - Grain shape
Seed - Physiological traits - Longevity
Tolerance and resistance - Stress tolerance
Character as QTL - Grain quality
Expression
Sequence/Locus
cDNA Accession No. AK100416
MSU ID LOC_Os05g46260.1
RAP ID Os05g0540000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Li F., Ye H., Wang Y., Zhou J., Zhang G., Liu X., Lu X., Wang F., Chen Q., Chen G., Xiao Y., Tang W., Deng H.
Plants (Basel) 2024  13(7) 
Transcriptomic Profiling of Two Rice Thermo-Sensitive Genic Male Sterile Lines with Contrasting Seed Storability after Artificial Accelerated Aging Treatment.
Lin Y., Lian L., Zhu Y., Wang L., Li H., Zheng Y., Cai Q., He W., Xie H., Wei Y., Wang H., Xie H., Zhang J.
Gene 2022  838  146708
Characterization and expression analysis of the glycosyltransferase 64 family in rice (Oryza sativa).
Ishikawa T., Fang L., Rennie E.A., Sechet J., Yan J., Jing B., Moore W., Cahoon E.B., Scheller H.V., Kawai-Yamada M., Mortimer J.C.
Plant Physiol. 2018  177(3)  938-952
GLUCOSAMINE INOSITOLPHOSPHORYLCERAMIDE TRANSFERASE1 (GINT1) Is a GlcNAc-Containing Glycosylinositol Phosphorylceramide Glycosyltransferase.
Yang H., Liu L., Wu K., Liu S., Liu X., Tian Y., Wang Y., Duan E., Lei J., Bao X., Chen R., Chen X., Ji Y., Zhang Y., Wang Y., Wan J.
ournal of Plant Biology 2002  65  187-198
FLOURY AND SHRUNKEN ENDOSPERM6 Encodes a Glycosyltransferase and is Essential for the Development of Rice Endosperm
DB Reference
Gramene ID -
Ontologies
Gene Ontology protein amino acid glycosylation( GO:0006486 )
lipid glycosylation( GO:0030259 )
integral to membrane( GO:0016021 )
transferase activity, transferring glycosyl groups( GO:0016757 )
endosperm development( GO:0009960 )
growth( GO:0040007 )
amyloplast organization( GO:0009660 )
response to humidity( GO:0009270 )
response to heat( GO:0009408 )
response to abscisic acid stimulus( GO:0009737 )
response to jasmonic acid stimulus( GO:0009753 )
response to cold( GO:0009409 )
response to salt stress( GO:0009651 )
response to water deprivation( GO:0009414 )
Trait Ontology heat tolerance( TO:0000259 )
humidity related trait( TO:0000441 )
seed viability( TO:0000345 )
seed longevity( TO:0000435 )
vigor related trait( TO:0000250 )
percent germination( TO:0010001 )
floury endosperm( TO:0000104 )
endosperm color( TO:0000487 )
grain shape( TO:0002730 )
starch content( TO:0000696 )
amylose content( TO:0000196 )
protein content( TO:0000598 )
fat and essential oil content( TO:0000604 )
abscisic acid sensitivity( TO:0000615 )
jasmonic acid sensitivity( TO:0000172 )
cold tolerance( TO:0000303 )
salt tolerance( TO:0006001 )
drought tolerance( TO:0000276 )
Plant Ontology endosperm development stage( PO:0007633 )
inflorescence( PO:0009049 )
Related Strains
-
Phenotype images
-
Last updated
Mar 11, 2025

/rice/oryzabase