Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol LCD
Gene Symbol Synonym OsLCD
CGSNL Gene Name LOW CADMIUM
Gene Name Synonym Low cadmium, low Cd
Protein Name
Allele lcd, LCD-1, LCD-2, LCD-3
Chromosome No. 1
Explanation TO:1000056: shoot system cadmium content. TO:0006059: cadmium content trait.
Trait Class Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK064171
MSU ID LOC_Os01g72670.1
LOC_Os01g72670.2
LOC_Os01g72670.3
LOC_Os01g72670.4
RAP ID Os01g0956700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Hu S., Zhou L., Wang J., Mawia A.M., Hui S., Xu B., Jiao G., Sheng Z., Shao G., Wei X., Wang L., Xie L., Zhao F., Tang S., Hu P.
Plant Biotechnol. J. 2024   
Production of grains with ultra-low heavy metal accumulation by pyramiding novel Alleles of OsNramp5 and OsLsi2 in two-line hybrid rice.
Zhang J., Zhu Y., Yu L., Yang M., Zou X., Yin C., Lin Y.
Cells 2022  11(3) 
Research Advances in Cadmium Uptake, Transport and Resistance in Rice (<i>Oryza sativa</i> L.).
Syu C.H., Nieh T.I., Hsieh M.T., Lo Y.C., Du P.R., Lin Y.W., Wu D.H.
Plants (Basel) 2022  11(21) 
Uncovering the Genetic of Cadmium Accumulation in the Rice 3K Panel.
Lee S.B., Kim G.J., Kim K.W., Chu S.H., Shin J.D., Lee Y.J., Park Y.J., Park S.W.
Rice (N Y) 2019  12(1)  84
Functional Haplotype and eQTL Analyses of Genes Affecting Cadmium Content in Cultivated Rice.
Shimo H., Ishimaru Y., An G., Yamakawa T., Nakanishi H., Nishizawa N.K.
J. Exp. Bot. 2011  62(15)  5727-34
Low cadmium (LCD), a novel gene related to cadmium tolerance and accumulation in rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology phloem transport( GO:0010233 )
response to cadmium ion( GO:0046686 )
cadmium ion transport( GO:0015691 )
cytoplasm( GO:0005737 )
nucleus( GO:0005634 )
Trait Ontology -
Plant Ontology root( PO:0009005 )
shoot system( PO:0009006 )
portion of vascular tissue( PO:0009015 )
companion cell( PO:0000071 )
leaf( PO:0025034 )
vascular bundle( PO:0005020 )
phloem( PO:0005417 )
Related Strains
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Phenotype images
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Last updated
Oct 8, 2024

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