Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | TF1 |
| Gene Symbol Synonym | OSTF1(t), OsTF1, OsHDZ3, OsHDZIP3, HDZ3, HDZIP3 |
| CGSNL Gene Name | TRANSCRIPTION FACTOR 1 |
| Gene Name Synonym | Oryza sativa transcription factor 1(t), Homeobox-leucine zipper protein TF1, Homeodomain transcription factor TF1, HD-ZIP protein TF1, Protein TRANSCRIPTION FACTOR 1, homeodomain-leucine zipper transcription factor 3, OsHDZIP transcription factor 3 |
| Protein Name | TRANSCRIPTION FACTOR 1 |
| Allele | |
| Chromosome No. | 1 |
| Explanation | Q5ZAY0. This gene encodes a homeodomain protein in rice. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:0060992: response to fungicide. |
| Trait Class |
Seed - Morphological traits - Embryo
Tolerance and resistance - Insect resistance Tolerance and resistance - Stress tolerance |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK121338
|
| MSU ID |
LOC_Os01g57890.1
LOC_Os01g57890.2 |
| RAP ID |
Os01g0788800 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
Link to INSD Accession List |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
|
Mahtha S.K., Kumari K., Gaur V., Yadav G.
Comput Struct Biotechnol J 2023 21 3946-3963 Cavity architecture based modulation of ligand binding tunnels in plant START domains.
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Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022 9(8) The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
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Yang,J.Y., Chung,M.C., Tu,C.Y. and Leu,W.M.
Plant Cell Physiol. 2002 43(6) 628-638 OSTF1: A HD-GL2 Family Homeobox Gene is Developmentally Regulated During Early Embryogenesis in Rice.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
defense response to insect( GO:0002213 )
response to jasmonic acid stimulus( GO:0009753 ) response to salt stress( GO:0009651 ) plasma membrane( GO:0005886 ) nucleus( GO:0005634 ) sequence-specific DNA binding( GO:0043565 ) transcription factor activity( GO:0003700 ) regulation of transcription, DNA-dependent( GO:0006355 ) transcription( GO:0006350 ) |
| Trait Ontology |
salt tolerance( TO:0006001 )
jasmonic acid sensitivity( TO:0000172 ) brown planthopper resistance( TO:0000424 ) insect damage resistance( TO:0000261 ) |
| Plant Ontology |
leaf( PO:0025034 )
root( PO:0009005 ) inflorescence( PO:0009049 ) endosperm( PO:0009089 ) |
| Related Strains | |
| - | |
| Phenotype images | |
| - | |
| Last updated | |
| Nov 29, 2023 | |
