Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol TF1
Gene Symbol Synonym OSTF1(t), OsTF1, OsHDZ3, OsHDZIP3, HDZ3, HDZIP3
CGSNL Gene Name TRANSCRIPTION FACTOR 1
Gene Name Synonym Oryza sativa transcription factor 1(t), Homeobox-leucine zipper protein TF1, Homeodomain transcription factor TF1, HD-ZIP protein TF1, Protein TRANSCRIPTION FACTOR 1, homeodomain-leucine zipper transcription factor 3, OsHDZIP transcription factor 3
Protein Name TRANSCRIPTION FACTOR 1
Allele
Chromosome No. 1
Explanation Q5ZAY0. This gene encodes a homeodomain protein in rice. START domain protein (Steroidogenic acute regulatory protein-related lipid transfer domain protein, StAR-related lipid transfer domain protein). GO:0060992: response to fungicide.
Trait Class Seed - Morphological traits - Embryo
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK121338
MSU ID LOC_Os01g57890.1
LOC_Os01g57890.2
RAP ID Os01g0788800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Mahtha S.K., Kumari K., Gaur V., Yadav G.
Comput Struct Biotechnol J 2023  21  3946-3963
Cavity architecture based modulation of ligand binding tunnels in plant START domains.
Ahmad S., Chen Y., Shah A.Z., Wang H., Xi C., Zhu H., Ge L.
Bioengineering (Basel) 2022  9(8) 
The Homeodomain-Leucine Zipper Genes Family Regulates the Jinggangmycin Mediated Immune Response of <i>Oryza sativa</i> to <i>Nilaparvata lugens</i>, and <i>Laodelphax striatellus</i>.
Yang,J.Y., Chung,M.C., Tu,C.Y. and Leu,W.M.
Plant Cell Physiol. 2002  43(6)  628-638
OSTF1: A HD-GL2 Family Homeobox Gene is Developmentally Regulated During Early Embryogenesis in Rice.
TextPresso Search Search textpresso for TF1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology defense response to insect( GO:0002213 )
response to jasmonic acid stimulus( GO:0009753 )
response to salt stress( GO:0009651 )
plasma membrane( GO:0005886 )
nucleus( GO:0005634 )
sequence-specific DNA binding( GO:0043565 )
transcription factor activity( GO:0003700 )
regulation of transcription, DNA-dependent( GO:0006355 )
transcription( GO:0006350 )
Trait Ontology salt tolerance( TO:0006001 )
jasmonic acid sensitivity( TO:0000172 )
brown planthopper resistance( TO:0000424 )
insect damage resistance( TO:0000261 )
Plant Ontology leaf( PO:0025034 )
root( PO:0009005 )
inflorescence( PO:0009049 )
endosperm( PO:0009089 )
Related Strains
-
Phenotype images
-
Last updated
Nov 29, 2023


/rice/oryzabase