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Basic Information
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CGSNL Gene Symbol
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PAP9
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Gene Symbol Synonym
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FSD1.1, OsFSD1.1, OsSOD-Fe, SOD-Fe, FeSOD1, OsFeSOD1, OsFSD2, FSD2, OsPAP9, OsPAP9/OsFSD2
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CGSNL Gene Name
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PEP-ASSOCIATED PROTEIN 9
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Gene Name Synonym
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Fe-dependent SOD 1.1, Fe-dependent superoxide dismutase 1.1, PEP-associated protein 9, plastid-encoded plastid polymerase-associated protein 9
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Protein Name
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PEP-ASSOCIATED PROTEIN 9
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Allele
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Osfsd2
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Chromosome No.
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6
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Explanation
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Q5VRL3. OsFSD2 in Navarro et al. 2021. GO:0120126: response to copper ion starvation. GO:0140899: plastid gene expression.
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Trait Class
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Biochemical character
Vegetative organ - Leaf
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK111656
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MSU ID
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LOC_Os06g02500.1
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RAP ID
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Os06g0115400
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Akbarzadeh Lelekami M., Pahlevani M.H., Zaynali Nezhad K., Mahdavi Mashaki K.
Sci Rep 2025 15(1) 2404
Gene metabolite relationships revealed metabolic adaptations of rice salt tolerance.
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Zhang C., Wang L., Wang Z., Dai Q., Feng H., Xu S., Liu X., Tang J., Yu H.
Rice (N Y) 2025 18(1) 14
OsPRDA1 Interacts With OsFSD2 To Promote Chloroplast Development by Regulating Chloroplast Gene Expression in Rice.
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Rehman M., Kundu B., Regon P., Tanti B.
3 Biotech 2023 13(12) 422
Biochemical and molecular properties of Boro rice (<i>Oryza sativa</i> L.) cultivars under abiotic stresses.
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Navarro B.B., Del Frari BK., Dias PVDC., Lemainski L.E., Mario R.B., Ponte L.R., Goergen A., Tarouco C.P., Neves V.M., Dressler V.L., Fett J.P., Brunetto G., Sperotto R.A., Nicoloso F.T., Ricachenevsky F.K.
Plant Physiol. Biochem. 2021 158 113-124
The copper economy response is partially conserved in rice (Oryza sativa L.).
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Cho S.H., Lee C.H., Gi E., Yim Y., Koh H.J., Kang K., Paek N.C.
Front Plant Sci 2018 9 364
The Rice Rolled Fine Striped (RFS) CHD3/Mi-2 Chromatin Remodeling Factor Epigenetically Regulates Genes Involved in Oxidative Stress Responses During Leaf Development.
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Huang B., Zhang J.M., Chen X.L., Xin X., Yin G.K., He J.J., Lu X.X., Zhou Y.C.
Plant Cell Rep. 2018
Oxidative damage and antioxidative indicators in 48 h germinated rice embryos during the vitrification-cryopreservation procedure.
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Rossatto T., do Amaral MN., Benitez L.C., Vighi I.L., Braga E.J.B., de Magalhães Júnior AM., Maia M.A.C., da Silva Pinto L.
Physiol Mol Biol Plants 2017 23(4) 865-875
Gene expression and activity of antioxidant enzymes in rice plants, cv. BRS AG, under saline stress.
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Andrés-Bordería A., Andrés F., Garcia-Molina A., Perea-García A., Domingo C., Puig S., Peñarrubia L.
Plant Mol. Biol. 2017
Copper and ectopic expression of the Arabidopsis transport protein COPT1 alter iron homeostasis in rice (Oryza sativa L.).
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Wang L., Wang C., Wang Y., Niu M., Ren Y., Zhou K., Zhang H., Lin Q., Wu F., Cheng Z., Wang J., Zhang X., Guo X., Jiang L., Lei C., Wang J., Zhu S., Zhao Z., Wan J.
Plant Mol. Biol. 2016
WSL3, a component of the plastid-encoded plastid RNA polymerase, is essential for early chloroplast development in rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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metal ion binding( GO:0046872 )
superoxide dismutase activity( GO:0004784 )
chloroplast( GO:0009507 )
response to copper ion( GO:0046688 )
response to salt stress( GO:0009651 )
response to cold( GO:0009409 )
transcription from plastid promoter( GO:0042793 )
chloroplast organization( GO:0009658 )
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Trait Ontology
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copper sensitivity( TO:0000021 )
salt tolerance( TO:0006001 )
cold tolerance( TO:0000303 )
chloroplast development trait( TO:0002715 )
leaf color( TO:0000326 )
growth and development trait( TO:0000357 )
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Plant Ontology
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-
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Related Strains
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Phenotype images
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Last updated
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Sep 5, 2025
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Update info.