Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol HSA1A
Gene Symbol Synonym hsa1(t), s(t), hst49
CGSNL Gene Name F2 STERILITY-1
Gene Name Synonym F2 sterility-1(t)
Protein Name DUF1618 DOMAIN PROTEIN
Allele hsa1-IR
Chromosome No. 12
Explanation This gene causes F2 sterility complementarily with hsa2(t) in the cross between japonica and indica cross. hsa1 locus contains two interacting genes, HSA1a and HSA1b, within a 30-kb region (Kubo et al. 2016). LC066597(cDNA accession, IR24, indica).
Trait Class Reproductive organ - Pollination, fertilization, fertility - Hybrid sterility
Reproductive organ - Pollination, fertilization, fertility - Hybrid weakness
Expression
Sequence/Locus
cDNA Accession No. AK119349
MSU ID LOC_Os12g39880.1
RAP ID Os12g0589400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Kubo T., Takashi T., Ashikari M., Yoshimura A., Kurata N.
Mol Plant 2016  9  221-232
Two Tightly Linked Genes at the hsa1 Locus Cause Both F1 and F2 hybrid sterility in Rice.
Kubo, T. and A. Yoshimura
Theor. Appl. Genet. 2005  110 (2)  346-355
Epistasis underlying female sterility detected in hybrid breakdown in a Japonica-Indica cross of rice (Oryza sativa L.).
Kubo, T, and A. Yoshimura
RGN 1999  16  68-70.
Complementary genes causing F2 sterility in Japonica/Indica cross of rice.
Kubo, T. and A. Yoshimura
RGN 1998  15  149-151
Linkage analysis of a gene controlling F2 sterility in Japonica/Indica backcrossed progenies of rice.
DB Reference
Gramene ID GR:0061092
Ontologies
Gene Ontology multicellular organismal development( GO:0007275 )
Trait Ontology f2-generation sterility( TO:0000046 )
f1-hybrid incompatibility( TO:0000042 )
Plant Ontology flower( PO:0009046 )
Related Strains
-
Phenotype images
-
Last updated
Feb 18, 2016

/rice/oryzabase