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Basic Information
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CGSNL Gene Symbol
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NLP3
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Gene Symbol Synonym
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OsNLP3
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CGSNL Gene Name
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NIN-LIKE PROTEIN 3
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Gene Name Synonym
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OsNIN-like3, OsNIN-like 3, NIN-like3, NIN-like 3, , NLP transcription factor 3, NODULE INCEPTION-like protein 3
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Protein Name
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NIN-LIKE PROTEIN 3
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Allele
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nlp3, nlp3-2, nlp3-3
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Chromosome No.
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1
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Explanation
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Q5NB82. the central transcription factor of nitrate signalling. GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity. GO:0090548: response to nitrate starvation. TO:0000975: grain width.
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Trait Class
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Tolerance and resistance - Stress tolerance
Other
Seed - Morphological traits - Endosperm
Seed - Morphological traits - Grain shape
Character as QTL - Grain quality
Character as QTL - Yield and productivity
Reproductive organ - panicle
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK067319
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MSU ID
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LOC_Os01g13540.1
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RAP ID
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Os01g0236700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Du M., Guo Z., Gong S., Xu L.
Front Plant Sci 2025 16 1597029
Genome-wide analysis of RWP-RK transcription factor family reveals its roles in nitrogen response in rice (<i>Oryza sativa</i>).
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Wang X., Liu Y., Li W., Ma X., Wang W., Jiang Z., Wang Y., Li L., Hu B., Chu C.
Adv Sci (Weinh) 2025 e07919
OsNRT1.1B-OsCNGC14/16-Ca2+-OsNLP3 Pathway: Phosphorylation-Mediated Maintenance of Nitrogen Homeostasis.
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Sun L.Q., Bai Y., Wu J., Fan S.J., Chen S.Y., Zhang Z.Y., Xia J.Q., Wang S.M., Wang Y.P., Qin P., Li S.G., Xu P., Zhao Z., Xiang C.B., Zhang Z.S.
Plant Commun 2024 100999
OsNLP3 enhances grain weight and reduces grain chalkiness in rice.
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Gao J., Ge S., Wang H., Fang Y., Sun L., He T., Cheng X., Wang D., Zhou X., Cai H., Li C., Liu Y., E Y., Meng J., Chen W.
Front Plant Sci 2023 14 1131937
Biochar-extracted liquor stimulates nitrogen related gene expression on improving nitrogen utilization in rice seedling.
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Wu J., Sun L.Q., Song Y., Bai Y., Wan G.Y., Wang J.X., Xia J.Q., Zhang Z.Y., Zhang Z.S., Zhao Z., Xiang C.B.
New Phytol. 2023
The OsNLP3/4-OsRFL module regulates nitrogen-promoted panicle architecture in rice.
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Xiang D., Meng F., Wang A., Wu Y., Wang Z., Zheng S., Mao C.
Plant J. 2021 107(2) 480-492
Root-secreted peptide OsPEP1 regulates primary root elongation in rice.
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Jagadhesan B., Sathee L., Meena H.S., Jha S.K., Chinnusamy V., Kumar A., Kumar S.
Sci Rep 2020 10(1) 9368
Genome wide analysis of NLP transcription factors reveals their role in nitrogen stress tolerance of rice.
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Paul K., Saha C., Nag M., Mandal D., Naiya H., Sen D., Mitra S., Kumar M., Bose D., Mukherjee G., Naskar N., Lahiri S., Das Ghosh U., Tripathi S., Sarkar M.P., Banerjee M., Kleinert A., Valentine A.J., Tripathy S., Sinharoy S., Seal A.
Plant Cell 2020 32(2) 486-507
A Tripartite Interaction among the Basidiomycete <i>Rhodotorula mucilaginosa</i>, N2-Fixing Endobacteria, and Rice Improves Plant Nitrogen Nutrition.
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Wang W., Hu B., Li A., Chu C.
J. Exp. Bot. 2019
NRT1.1 in plants: functions beyond nitrate transporter.
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Hu B., Jiang Z., Wang W., Qiu Y., Zhang Z., Liu Y., Li A., Gao X., Liu L., Qian Y., Huang X., Yu F., Kang S., Wang Y., Xie J., Cao S., Zhang L., Wang Y., Xie Q., Kopriva S., Chu C.
Nat Plants 2019 5(4) 401-413
Nitrate-NRT1.1B-SPX4 cascade integrates nitrogen and phosphorus signalling networks in plants.
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Almeida D.M., Gregorio G.B., Oliveira M.M., Saibo N.J.
Plant Mol. Biol. 2016
Five novel transcription factors as potential regulators of OsNHX1 gene expression in a salt tolerant rice genotype.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to ammonium ion( GO:0060359 )
response to starvation( GO:0042594 )
response to abscisic acid stimulus( GO:0009737 )
response to salicylic acid stimulus( GO:0009751 )
response to cytokinin stimulus( GO:0009735 )
response to cold( GO:0009409 )
response to heat( GO:0009408 )
response to water deprivation( GO:0009414 )
transcription, DNA-dependent( GO:0006351 )
nucleus( GO:0005634 )
DNA binding( GO:0003677 )
response to symbiotic fungus( GO:0009610 )
response to fungus( GO:0009620 )
regulation of transcription, DNA-dependent( GO:0006355 )
response to nitrate( GO:0010167 )
response to nutrient( GO:0007584 )
regulation of starch biosynthetic process( GO:0010581 )
endosperm development( GO:0009960 )
positive regulation of cell growth( GO:0030307 )
positive regulation of cell division( GO:0051781 )
seed development( GO:0048316 )
regulation of inflorescence meristem growth( GO:0010081 )
inflorescence development( GO:0010229 )
calcium-mediated signaling( GO:0019722 )
positive regulation of nitrogen utilization( GO:0045848 )
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Trait Ontology
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nitrogen sensitivity( TO:0000011 )
drought tolerance( TO:0000276 )
heat tolerance( TO:0000259 )
cold tolerance( TO:0000303 )
cytokinin sensitivity( TO:0000167 )
abscisic acid sensitivity( TO:0000615 )
nutrient sensitivity( TO:0000480 )
protein content( TO:0000598 )
starch content( TO:0000696 )
filled grain number( TO:0000447 )
grain length( TO:0000734 )
1000-seed weight( TO:0000382 )
grain size( TO:0000397 )
starch grain synthesis( TO:0002658 )
tiller number( TO:0000346 )
seed development trait( TO:0000653 )
chalky endosperm( TO:0000266 )
grain weight( TO:0000590 )
meristem tissue development trait( TO:0006016 )
secondary branch number( TO:0000557 )
primary branch number( TO:0000547 )
panicle length( TO:0000040 )
panicle size( TO:0006032 )
inflorescence development trait( TO:0000621 )
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Plant Ontology
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seed imbibition stage( PO:0007022 )
root( PO:0009005 )
seed development stage( PO:0001170 )
endosperm development stage( PO:0007633 )
inflorescence development stage( PO:0001083 )
leaf( PO:0025034 )
inflorescence( PO:0009049 )
stem( PO:0009047 )
seed( PO:0009010 )
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Related Strains
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Phenotype images
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Last updated
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Jan 6, 2026
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Update info.