Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol TSD2
Gene Symbol Synonym OsTSD2, OsQUA2, QUA2
CGSNL Gene Name TUMOROUS SHOOT DEVELOPMENT 2
Gene Name Synonym TUMOROUS SHOOT DEVELOPMENT2, QUASIMODO2, QUASIMODO 2
Protein Name
Allele tsd2, Ostsd2, Ostsd2a, Ostsd2b, Ostsd2c, Osqua2, Osqua2-1, Osqua2-2, Osqua2-3, tsd2-1, tsd2-2, sstm1
Chromosome No. 2
Explanation LOC_Os02g51860. the rice ortholog of AtQUA2. a pectin methyltransferase. GO:1903648: positive regulation of chlorophyll catabolic process.
Trait Class Vegetative organ - Leaf
Vegetative organ - Culm
Vegetative organ - Root
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Expression
Sequence/Locus
cDNA Accession No. AK288226
MSU ID LOC_Os02g51860.1
RAP ID Os02g0755000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Fang C., Li K., Wu Y., Wang D., Zhou J., Liu X., Li Y., Jin C., Liu X., Mur L.A.J., Luo J.
Plant Cell Environ. 2019  42(5)  1503-1512
OsTSD2-mediated cell wall modification affects ion homeostasis and salt tolerance.
Xu Y., Sechet J., Wu Y., Fu Y., Zhu L., Li J., Zhang Y., Gineau E., Gaertner C., Zhou J., Fan X., Liu Y., Zhou L., Mouille G., Lin X.
Plant Physiol. 2017  174(3)  1595-1608
Rice Sucrose Partitioning Mediated by a Putative Pectin Methyltransferase and Homogalacturonan Methylesterification.
Fang C., Zhang H., Wan J., Wu Y., Li K., Jin C., Chen W., Wang S., Wang W., Zhang H., Zhang P., Zhang F., Qu L., Liu X., Zhou D.X., Luo J.
Mol Plant 2016   
Control of leaf senescence by a MeOH-Jasmonates Cascade That Is Epigenetically Regulated by OsSRT1 in Rice.
Qu L., Wu C., Zhang F., Wu Y., Fang C., Jin C., Liu X., Luo J.
J. Exp. Bot. 2016   
Rice putative methyltransferase gene OsTSD2 is required for root development involving pectin modification.
DB Reference
Gramene ID -
Ontologies
Gene Ontology endosome( GO:0005768 )
vacuolar membrane( GO:0005774 )
trans-Golgi network( GO:0005802 )
cell adhesion( GO:0007155 )
S-adenosylmethionine-dependent methyltransferase activity( GO:0008757 )
response to auxin stimulus( GO:0009733 )
response to abscisic acid stimulus( GO:0009737 )
aerenchyma formation( GO:0010618 )
integral to membrane( GO:0016021 )
homogalacturonan metabolic process( GO:0010394 )
Golgi apparatus( GO:0005794 )
methylation( GO:0032259 )
pectin metabolic process( GO:0045488 )
pectin biosynthetic process( GO:0045489 )
root development( GO:0048364 )
leaf senescence( GO:0010150 )
ion homeostasis( GO:0050801 )
plant-type cell wall modification( GO:0009827 )
response to herbicide( GO:0009635 )
response to osmotic stress( GO:0006970 )
response to cold( GO:0009409 )
response to water deprivation( GO:0009414 )
response to salt stress( GO:0009651 )
chlorophyll catabolic process( GO:0015996 )
methyltransferase activity( GO:0008168 )
Trait Ontology root development trait( TO:0000656 )
plant height( TO:0000207 )
abscisic acid content( TO:0002667 )
abscisic acid sensitivity( TO:0000615 )
auxin sensitivity( TO:0000163 )
lateral root number( TO:0001013 )
grain yield( TO:0000396 )
sucrose content( TO:0000328 )
jasmonic acid content( TO:0002668 )
leaf senescence( TO:0000249 )
chlorophyll content( TO:0000495 )
salt tolerance( TO:0006001 )
drought tolerance( TO:0000276 )
cold tolerance( TO:0000303 )
osmotic response sensitivity( TO:0000095 )
herbicide sensitivity( TO:0000058 )
shoot sodium content( TO:0020004 )
shoot potassium content( TO:0020003 )
Plant Ontology root development stage( PO:0007520 )
4 root elongation stage( PO:0001031 )
vascular bundle( PO:0005020 )
stem( PO:0009047 )
Related Strains
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Phenotype images
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Last updated
Aug 10, 2019

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