Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol HDAC6
Gene Symbol Synonym OsHDAC6, OsHDA706, HDA706
CGSNL Gene Name HISTONE DEACETYLASE 6
Gene Name Synonym histone deacetylase 6
Protein Name HISTONE DEACETYLASE 6
Allele oshda706, oshda706#6, oshda706#10
Chromosome No. 6
Explanation HDA706 in Wei et al. 2021, Hou et al. 2021, Yang et al. 2024. RPD/HDA1 family. GO:2000022: regulation of jasmonic acid mediated signaling pathway. GO:0141051: histone H4K deacetylase activity. GO:0090351: seedling development. TO:0000949: seedling growth and development trait.
Trait Class Biochemical character
Vegetative organ - Root
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK100812
MSU ID LOC_Os06g37420.1
LOC_Os06g37420.2
RAP ID Os06g0571100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Yang Z., Du J., Tan X., Zhang H., Li L., Li Y., Wei Z., Xu Z., Lu Y., Chen J., Sun Z.
Cell Rep 2024  43(3)  113838
histone deacetylase OsHDA706 orchestrates rice broad-spectrum antiviral immunity and is impeded by a viral effector.
Huang Y., Liu J., Cheng L., Xu D., Liu S., Hu H., Ling Y., Yang R., Zhang Y.
Plants (Basel) 2024  13(17) 
Genome-Wide Analysis of the Histone Modification Gene (<i>HM</i>) Family and Expression Investigation during Anther Development in Rice (<i>Oryza sativa</i> L.).
Hou J., Ren R., Xiao H., Chen Z., Yu J., Zhang H., Shi Q., Hou H., He S., Li L.
Planta 2021  253(3)  72
Characteristic and evolution of HAT and HDAC genes in Gramineae genomes and their expression analysis under diverse stress in Oryza sativa.
Xu Q., Liu Q., Chen Z., Yue Y., Liu Y., Zhao Y., Zhou D.X.
Nucleic Acids Res. 2021  49(8)  4613-4628
Histone deacetylases control lysine acetylation of ribosomal proteins in rice.
Zhang H., Lu Y., Zhao Y., Zhou D.X.
Plant Sci. 2016  248  28-36
OsSRT1 is involved in rice seed development through regulation of starch metabolism gene expression.
DB Reference
Gramene ID -
Ontologies
Gene Ontology hydrolase activity( GO:0016787 )
chloroplast( GO:0009507 )
response to abiotic stimulus( GO:0009628 )
response to jasmonic acid stimulus( GO:0009753 )
response to abscisic acid stimulus( GO:0009737 )
response to water deprivation( GO:0009414 )
response to osmotic stress( GO:0006970 )
response to cold( GO:0009409 )
response to flooding( GO:0009413 )
histone deacetylase complex( GO:0000118 )
histone deacetylation( GO:0016575 )
metal ion binding( GO:0046872 )
histone deacetylase activity( GO:0004407 )
response to auxin stimulus( GO:0009733 )
response to salt stress( GO:0009651 )
cytoplasm( GO:0005737 )
regulation of jasmonic acid biosynthetic process( GO:0080141 )
jasmonic acid mediated signaling pathway( GO:0009867 )
defense response to virus( GO:0051607 )
Trait Ontology abiotic stress trait( TO:0000168 )
phosphorus sensitivity( TO:0000102 )
cold tolerance( TO:0000303 )
osmotic response sensitivity( TO:0000095 )
drought tolerance( TO:0000276 )
abscisic acid sensitivity( TO:0000615 )
jasmonic acid sensitivity( TO:0000172 )
salt tolerance( TO:0006001 )
auxin sensitivity( TO:0000163 )
viral disease resistance( TO:0000148 )
jasmonic acid content( TO:0002668 )
root length( TO:0000227 )
Plant Ontology leaf( PO:0025034 )
Related Strains
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Phenotype images
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Last updated
Jan 14, 2025

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