Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol VP1
Gene Symbol Synonym Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
Gene Name Synonym Viviparous-1, Protein viviparous homolog, B3 domain-containing protein VP1, Transcription activator VP1-rice, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 4
Allele Osvp1, Osvp1-1, Osvp1-2, Osabi3
Chromosome No. 1
Explanation Vp1 encodes a seed-specific regulatory transcription factor. a global regulator of seed maturation. D16640. P37398. PO:0009010; seed. GRO:0007045; 09-mature grain stage. a predicted lethal-phenotype gene in Lloyd et al. 2015. GO:1990110: callus formation.
Trait Class Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
Expression embryo - Em4 - Globular stage III
embryo - Em8 - Enlargement of organs
cDNA Accession No. AK073805
MSU ID LOC_Os01g68370.1
RAP ID Os01g0911700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
He Y., Sun S., Zhao J., Huang Z., Peng L., Huang C., Tang Z., Huang Q., Wang Z.
Nat Commun 2023  14(1)  2296
UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.
Li Q., Zhai W., Wei J., Jia Y.
Front Genet 2023  14  1111318
Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.
Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023  6(1)  457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
Guo F., Zhang P., Wu Y., Lian G., Yang Z., Liu W., Buerte B., Zhou C., Zhang W., Li D., Han N., Tong Z., Zhu M., Xu L., Chen M., Bian H.
Front Plant Sci 2022  13  887980
Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.
He Y., Chen S., Liu K., Chen Y., Cheng Y., Zeng P., Zhu P., Xie T., Chen S., Zhang H., Cheng J.
Plant Biotechnol. J. 2022  20(7)  1346-1362
OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.
Su L., Yang J., Li D., Peng Z., Xia A., Yang M., Luo L., Huang C., Wang J., Wang H., Chen Z., Guo T.
Rice (N Y) 2021  14(1)  1
Dynamic genome-wide association analysis and identification of candidate genes involved in anaerobic germination tolerance in rice.
Yuan Z., Fan K., Wang Y., Tian L., Zhang C., Sun W., He H., Yu S.
Plant Physiol. 2021   
OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances.
He Y., Zhao J., Yang B., Sun S., Peng L., Wang Z.
Plant Biotechnol. J. 2020   
Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigour through mediating crosstalk between auxin and abscisic acid in rice.
Zhao N., Zhang K., Wang C., Yan H., Liu Y., Xu W., Su Z.
Front Genet 2020  11  766
Systematic Analysis of Differential H3K27me3 and H3K4me3 Deposition in Callus and Seedling Reveals the Epigenetic Regulatory Mechanisms Involved in Callus Formation in Rice.
Xu F., Tang J., Gao S., Cheng X., Du L., Chu C.
Plant J. 2019  100(5)  1036-1051
Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.
Du L., Xu F., Fang J., Gao S., Tang J., Fang S., Wang H., Tong H., Zhang F., Chu J., Wang G., Chu C.
Plant J. 2018  95(3)  545-556
Endosperm sugar accumulation caused by mutation of phs8/ISA1 leads to pre-harvest sprouting in rice.
Borah P., Sharma E., Kaur A., Chandel G., Mohapatra T., Kapoor S., Khurana J.P.
Sci Rep 2017  7  42131
Analysis of drought-responsive signalling network in two contrasting rice cultivars using transcriptome-based approach.
Lloyd J.P., Seddon A.E., Moghe G.D., Simenc M.C., Shiu S.H.
Plant Cell 2015   
Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes.
Du W., Cheng J., Cheng Y., Wang L., He Y., Wang Z., Zhang H.
Plant Biol (Stuttg) 2015   
Physiological characteristics and related gene expression of after-ripening on seed dormancy release in rice.
Zhang Y., Miao X., Xia X., He Z.
Theor. Appl. Genet. 2014  127(4)  855-66
Cloning of seed dormancy genes (TaSdr) associated with tolerance to pre-harvest sprouting in common wheat and development of a functional marker.
Yang J., Lee S., Hang R., Kim S.R., Lee Y.S., Cao X., Amasino R., An G.
Plant J. 2013  73(4)  566-78
OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
Sugimoto,K., Takeuchi,Y., Ebana,K., Miyao,A., Hirochika,H., Hara,N., Ishiyama,K., Kobayashi,M., Ban,Y., Hattori,T. and Yano,M.
Proc. Natl. Acad. Sci. U.S.A. 2010  107(13)  5792-5797
Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice
Shobbar ZS,Oane R,Gamuyao R,De Palma J,Malboobi MA,Karimzadeh G,Javaran MJ,Bennett J
New Phytol. 2008  178  68-79
Abscisic acid regulates gene expression in cortical fiber cells and silica cells of rice shoots.
Zou,M., Guan,Y., Ren,H., Zhang,F. and Chen,F.
Biochem. Biophys. Res. Commun. 2007  360(2)  307-313
Characterization of alternative splicing products of bZIP transcription factors OsABI5
Miyoshi, K., Y. Kagaya, Y. Ogawa, Y. Nagato and T. Hattori
Plant Cell Physiol. 2002  43  307-313.
Temporal and spatial expression pattern of the OSVP1 and OSEM genes during seed development in rice.
Hobo,T., Kowyama,Y. and Hattori,T.
Proc. Natl. Acad. Sci. U.S.A. 1999  96(26)  15348-15353
A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription.
Miyoshi, K., T. Hattori and Y. Nagato
RGN 1997  14  138-141
Expression pattern of OSVP1 in developing rice seed.
Nakagawa, H., E. Ohkura, K. Ohmiya and T. Hattori
Plant Cell Physiol. 1996  37  355-362.
The seed-specific transcription factor VP1 (OSVP1) is expressed in rice suspension-cultured cells.
Hattori,T., Terada,T. and Hamasuna,S.
Plant J. 1995  7(6)  913-925
Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis-acting promoter elements required for regulation by abscisic acid and VP1.
Hattori,T., Terada,T. and Hamasuna,S.T.
Plant Mol. Biol. 1994  24(5)  805-810
Sequence and functional analyses of the rice gene homologous to the maize Vp1.
TextPresso Search Search textpresso for VP1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060995
Gene Ontology negative regulation of seed germination( GO:0010187 )
response to auxin stimulus( GO:0009733 )
response to water deprivation( GO:0009414 )
response to anoxia( GO:0034059 )
response to abscisic acid stimulus( GO:0009737 )
basal transcription repressor activity( GO:0017163 )
DNA binding( GO:0003677 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
abscisic acid mediated signaling( GO:0009738 )
embryonic development( GO:0009790 )
regulation of transcription( GO:0045449 )
seed germination( GO:0009845 )
Trait Ontology vivipary( TO:0000619 )
abscisic acid sensitivity( TO:0000615 )
seed dormancy( TO:0000253 )
drought tolerance( TO:0000276 )
auxin sensitivity( TO:0000163 )
coleoptile length( TO:0001007 )
callus induction( TO:0000428 )
Plant Ontology seed( PO:0009010 )
0 seed germination stage( PO:0007057 )
Related Strains
Phenotype images
Last updated
Aug 25, 2023