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Basic Information
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CGSNL Gene Symbol
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VP1
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Gene Symbol Synonym
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Vp1* (OSVP1), OsVP1, OsVp1, Vp1, ABI3, OsABI3, OsLFL4, OsVp-1, OSVP1
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CGSNL Gene Name
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VIVIPAROUS 1
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Gene Name Synonym
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Viviparous-1, Protein viviparous homolog, B3 domain-containing protein VP1, Transcription activator VP1-rice, LEAFY COTYLEDON 2 and FUSCA 3-LIKE 4
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Protein Name
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B3 DOMAIN-CONTAINING PROTEIN VP1
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Allele
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Osvp1, Osvp1-1, Osvp1-2, Osabi3
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Chromosome No.
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1
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Explanation
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Vp1 encodes a seed-specific regulatory transcription factor. a global regulator of seed maturation. D16640. P37398. PO:0009010; seed. GRO:0007045; 09-mature grain stage. a predicted lethal-phenotype gene in Lloyd et al. 2015. GO:1990110: callus formation.
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Trait Class
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Seed - Physiological traits - Dormancy
Tolerance and resistance - Stress tolerance
Character as QTL - Germination
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Expression
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embryo - Em4 - Globular stage III
embryo - Em8 - Enlargement of organs
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Sequence/Locus
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cDNA Accession No.
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AK073805
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MSU ID
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LOC_Os01g68370.1
LOC_Os01g68370.2
LOC_Os01g68370.3
LOC_Os01g68370.4
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RAP ID
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Os01g0911700
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Bataller S., Davis J.A., Gu L., Baca S., Chen G., Majid A., Villacastin A.J., Barth D., Han M.V., Rushton P.J., Shen Q.J.
BMC Plant Biol. 2024 24(1) 1090
Disruption of the OsWRKY71 transcription factor gene results in early rice seed germination under normal and cold stress conditions.
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He Y., Sun S., Zhao J., Huang Z., Peng L., Huang C., Tang Z., Huang Q., Wang Z.
Nat Commun 2023 14(1) 2296
UDP-glucosyltransferase OsUGT75A promotes submergence tolerance during rice seed germination.
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Guo F., Wang H., Lian G., Cai G., Liu W., Zhang H., Li D., Zhou C., Han N., Zhu M., Su Y., Seo P.J., Xu L., Bian H.
Commun Biol 2023 6(1) 457
Initiation of scutellum-derived callus is regulated by an embryo-like developmental pathway in rice.
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Li Q., Zhai W., Wei J., Jia Y.
Front Genet 2023 14 1111318
Rice lipid transfer protein, OsLTPL23, controls seed germination by regulating starch-sugar conversion and ABA homeostasis.
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He Y., Chen S., Liu K., Chen Y., Cheng Y., Zeng P., Zhu P., Xie T., Chen S., Zhang H., Cheng J.
Plant Biotechnol. J. 2022 20(7) 1346-1362
OsHIPL1, a hedgehog-interacting protein-like 1 protein, increases seed vigour in rice.
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Guo F., Zhang P., Wu Y., Lian G., Yang Z., Liu W., Buerte B., Zhou C., Zhang W., Li D., Han N., Tong Z., Zhu M., Xu L., Chen M., Bian H.
Front Plant Sci 2022 13 887980
Rice LEAFY COTYLEDON1 Hinders Embryo Greening During the Seed Development.
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Yuan Z., Fan K., Wang Y., Tian L., Zhang C., Sun W., He H., Yu S.
Plant Physiol. 2021
OsGRETCHENHAGEN3-2 modulates rice seed storability via accumulation of abscisic acid and protective substances.
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Su L., Yang J., Li D., Peng Z., Xia A., Yang M., Luo L., Huang C., Wang J., Wang H., Chen Z., Guo T.
Rice (N Y) 2021 14(1) 1
Dynamic genome-wide association analysis and identification of candidate genes involved in anaerobic germination tolerance in rice.
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Zhao N., Zhang K., Wang C., Yan H., Liu Y., Xu W., Su Z.
Front Genet 2020 11 766
Systematic Analysis of Differential H3K27me3 and H3K4me3 Deposition in Callus and Seedling Reveals the Epigenetic Regulatory Mechanisms Involved in Callus Formation in Rice.
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He Y., Zhao J., Yang B., Sun S., Peng L., Wang Z.
Plant Biotechnol. J. 2020
Indole-3-acetate beta-glucosyltransferase OsIAGLU regulates seed vigour through mediating crosstalk between auxin and abscisic acid in rice.
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Xu F., Tang J., Gao S., Cheng X., Du L., Chu C.
Plant J. 2019 100(5) 1036-1051
Control of rice pre-harvest sprouting by glutaredoxin-mediated abscisic acid signaling.
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Du L., Xu F., Fang J., Gao S., Tang J., Fang S., Wang H., Tong H., Zhang F., Chu J., Wang G., Chu C.
Plant J. 2018 95(3) 545-556
Endosperm sugar accumulation caused by mutation of phs8/ISA1 leads to pre-harvest sprouting in rice.
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Borah P., Sharma E., Kaur A., Chandel G., Mohapatra T., Kapoor S., Khurana J.P.
Sci Rep 2017 7 42131
Analysis of drought-responsive signalling network in two contrasting rice cultivars using transcriptome-based approach.
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Lloyd J.P., Seddon A.E., Moghe G.D., Simenc M.C., Shiu S.H.
Plant Cell 2015
Characteristics of Plant Essential Genes Allow for within- and between-Species Prediction of Lethal Mutant Phenotypes.
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Du W., Cheng J., Cheng Y., Wang L., He Y., Wang Z., Zhang H.
Plant Biol (Stuttg) 2015
Physiological characteristics and related gene expression of after-ripening on seed dormancy release in rice.
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Zhang Y., Miao X., Xia X., He Z.
Theor. Appl. Genet. 2014 127(4) 855-66
Cloning of seed dormancy genes (TaSdr) associated with tolerance to pre-harvest sprouting in common wheat and development of a functional marker.
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Yang J., Lee S., Hang R., Kim S.R., Lee Y.S., Cao X., Amasino R., An G.
Plant J. 2013 73(4) 566-78
OsVIL2 functions with PRC2 to induce flowering by repressing OsLFL1 in rice.
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Sugimoto,K., Takeuchi,Y., Ebana,K., Miyao,A., Hirochika,H., Hara,N., Ishiyama,K., Kobayashi,M., Ban,Y., Hattori,T. and Yano,M.
Proc. Natl. Acad. Sci. U.S.A. 2010 107(13) 5792-5797
Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice
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Shobbar ZS,Oane R,Gamuyao R,De Palma J,Malboobi MA,Karimzadeh G,Javaran MJ,Bennett J
New Phytol. 2008 178 68-79
Abscisic acid regulates gene expression in cortical fiber cells and silica cells of rice shoots.
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Zou,M., Guan,Y., Ren,H., Zhang,F. and Chen,F.
Biochem. Biophys. Res. Commun. 2007 360(2) 307-313
Characterization of alternative splicing products of bZIP transcription factors OsABI5
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Miyoshi, K., Y. Kagaya, Y. Ogawa, Y. Nagato and T. Hattori
Plant Cell Physiol. 2002 43 307-313.
Temporal and spatial expression pattern of the OSVP1 and OSEM genes during seed development in rice.
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Hobo,T., Kowyama,Y. and Hattori,T.
Proc. Natl. Acad. Sci. U.S.A. 1999 96(26) 15348-15353
A bZIP factor, TRAB1, interacts with VP1 and mediates abscisic acid-induced transcription.
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Miyoshi, K., T. Hattori and Y. Nagato
RGN 1997 14 138-141
Expression pattern of OSVP1 in developing rice seed.
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Nakagawa, H., E. Ohkura, K. Ohmiya and T. Hattori
Plant Cell Physiol. 1996 37 355-362.
The seed-specific transcription factor VP1 (OSVP1) is expressed in rice suspension-cultured cells.
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Hattori,T., Terada,T. and Hamasuna,S.
Plant J. 1995 7(6) 913-925
Regulation of the Osem gene by abscisic acid and the transcriptional activator VP1: analysis of cis-acting promoter elements required for regulation by abscisic acid and VP1.
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Hattori,T., Terada,T. and Hamasuna,S.T.
Plant Mol. Biol. 1994 24(5) 805-810
Sequence and functional analyses of the rice gene homologous to the maize Vp1.
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DB Reference
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Gramene ID
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GR:0060995
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Ontologies
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Gene Ontology
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seed germination on parent plant( GO:0048623 )
negative regulation of seed germination( GO:0010187 )
response to auxin stimulus( GO:0009733 )
response to water deprivation( GO:0009414 )
response to anoxia( GO:0034059 )
response to abscisic acid stimulus( GO:0009737 )
basal transcription repressor activity( GO:0017163 )
DNA binding( GO:0003677 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
regulation of transcription, DNA-dependent( GO:0006355 )
abscisic acid mediated signaling( GO:0009738 )
embryonic development( GO:0009790 )
regulation of transcription( GO:0045449 )
seed germination( GO:0009845 )
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Trait Ontology
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vivipary( TO:0000619 )
abscisic acid sensitivity( TO:0000615 )
seed dormancy( TO:0000253 )
drought tolerance( TO:0000276 )
auxin sensitivity( TO:0000163 )
coleoptile length( TO:0001007 )
callus induction( TO:0000428 )
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Plant Ontology
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seed( PO:0009010 )
0 seed germination stage( PO:0007057 )
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Related Strains
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Phenotype images
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Last updated
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May 23, 2025
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Update info.