Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SFR6
Gene Symbol Synonym OsMed16_1, Med16_1, OsSFR6, OsMED16, MED16
CGSNL Gene Name SENSITIVE TO FREEZING-6
Gene Name Synonym Mediator 16_1, Mediator complex subunit 16, Mediator subunit 16
Protein Name MEDIATOR COMPLEX SUBUNIT 16
Allele
Chromosome No. 10
Explanation a functional rice orthologue of Arabidopsis SENSITIVE TO FREEZING-6 (AtSFR6). PO:0030123: panicle inflorescence.
Trait Class Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Tolerance and resistance - Disease resistance
Vegetative organ - Leaf
Seed - Morphological traits - Grain shape
Character as QTL - Yield and productivity
Character as QTL - Plant growth activity
Expression
Sequence/Locus
cDNA Accession No. AK101061
MSU ID LOC_Os10g35560.1
LOC_Os10g35560.2
RAP ID Os10g0498700
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Zhang H., Zheng D., Yin L., Song F., Jiang M.
Front Plant Sci 2021  12  652453
Functional Analysis of <i>OsMED16</i> and <i>OsMED25</i> in Response to Biotic and Abiotic Stresses in Rice.
Jiang J., Yang G., Xin Y., Wang Z., Yan W., Chen Z., Tang X., Xia J.
Genes (Basel) 2021  12(5) 
Overexpression of <i>OsMed16</i> Inhibits the Growth of Rice and Causes Spontaneous Cell Death.
de Freitas GM., Thomas J., Liyanage R., Lay J.O., Basu S., Ramegowda V., do Amaral MN., Benitez L.C., Bolacel Braga EJ., Pereira A.
PLoS ONE 2019  14(6)  e0218019
cold tolerance response mechanisms revealed through comparative analysis of gene and protein expression in multiple rice genotypes.
Malik N., Dwivedi N., Singh A.K., Parida S.K., Agarwal P., Thakur J.K., Tyagi A.K.
Sci Rep 2016  6  23253
An Integrated Genomic Strategy Delineates Candidate Mediator Genes Regulating grain size and Weight in Rice.
Wathugala D.L. , Richards S.A. , Knight H. , Knight M.R.
New Phytol. 2011  191(4)  984-95
OsSFR6 is a functional rice orthologue of SENSITIVE TO FREEZING-6 and can act as a regulator of COR gene expression, osmotic stress and freezing tolerance in Arabidopsis.
TextPresso Search Search textpresso for SFR6 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Ontologies
Gene Ontology regulation of transcription, DNA-dependent( GO:0006355 )
nucleus( GO:0005634 )
leaf senescence( GO:0010150 )
negative regulation of growth( GO:0045926 )
positive regulation of cell death( GO:0010942 )
necrotic cell death( GO:0070265 )
response to ethylene stimulus( GO:0009723 )
response to jasmonic acid stimulus( GO:0009753 )
response to salicylic acid stimulus( GO:0009751 )
response to abscisic acid stimulus( GO:0009737 )
regulation of hydrogen peroxide metabolic process( GO:0010310 )
defense response to fungus( GO:0050832 )
response to cold( GO:0009409 )
response to freezing( GO:0050826 )
response to osmotic stress( GO:0006970 )
Trait Ontology cold tolerance( TO:0000303 )
osmotic response sensitivity( TO:0000095 )
blast disease( TO:0000074 )
hydrogen peroxide content( TO:0000605 )
abscisic acid sensitivity( TO:0000615 )
jasmonic acid sensitivity( TO:0000172 )
ethylene sensitivity( TO:0000173 )
chlorophyll content( TO:0000495 )
growth and development trait( TO:0000357 )
yield trait( TO:0000371 )
leaf senescence( TO:0000249 )
plant height( TO:0000207 )
tiller number( TO:0000346 )
grain yield( TO:0000396 )
grain yield per plant( TO:0000449 )
panicle number( TO:0000152 )
panicle length( TO:0000040 )
1000-dehulled grain weight( TO:0000592 )
seed width( TO:0000149 )
Plant Ontology root( PO:0009005 )
stem( PO:0009047 )
leaf( PO:0025034 )
ligule( PO:0020105 )
4 leaf senescence stage( PO:0001054 )
inflorescence( PO:0009049 )
seed( PO:0009010 )
Related Strains
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Phenotype images
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Last updated
Sep 13, 2021


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