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Basic Information
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CGSNL Gene Symbol
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SLR1
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Gene Symbol Synonym
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slr1-1, slr1, slr, GAI, OsGAI, OsSLR1, Os SLR1, OsRGA1, OsGRAS-18, OsGRAS-18, GRAS-18, GRAS18, SLR-1
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CGSNL Gene Name
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SLENDER RICE1
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Gene Name Synonym
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slender rice1-1, slender rice, Giberellin-insensitive gene homolog, DELLA protein SLR1, Protein SLENDER RICE1, Gibberellic acid-insensitive mutant protein, Slender Rice 1, SLENDER 1, SLENDER1, GRAS protein 18
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Protein Name
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DELLA PROTEIN SLR1
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Allele
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slr1-1, Slr1-d1, Slr1-d3, slr1, slr1-6
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Chromosome No.
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3
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Explanation
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A constitutive GA-responsive mutant which shows a slender phenotype with elongated stem, leaf sheath, and blade similar to that of rice plants treated exogenously with GA3.This gene is the loss-of-function mutant in the SLR1 gene, which is an ortholog of GAI and RGA in Arabidopsis, RHT in wheat, and D8 in maize. DELLA PROTEIN. Q7G7J6. AB262980. AB030956. GRO:0007047; 02-seedling. AY781175. OsRGA1 in Zhou et al. 2014. KC611066-KC611074 (O. sativa and wild rice species, partial cds). GO:2001006: regulation of cellulose biosynthetic process. GO:0072488: ammonium transmembrane transport. KC611073.
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Trait Class
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Vegetative organ - Culm
Vegetative organ - Root
Tolerance and resistance - Disease resistance
Tolerance and resistance - Insect resistance
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK242577
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MSU ID
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LOC_Os03g49990.1
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RAP ID
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Os03g0707600
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Links
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Oryzabase Chromosome View
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IRGSP 1.0
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Build5
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RAP-DB
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IRGSP 1.0
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Build5
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Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Dutta M., Saha A., Moin M., Kirti P.B.
Front Plant Sci 2021 12 777285
Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS transcription factor Genes in Rice.
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M T AP., Ramchander S., K K K., Muthamilarasan M., Pillai M.A.
PLoS ONE 2021 16(1) e0245603
Assessment of efficacy of mutagenesis of gamma-irradiation in plant height and days to maturity through expression analysis in rice.
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Kim S., Park S.I., Kwon H., Cho M.H., Kim B.G., Chung J.H., Nam M.H., Song J.S., Kim K.H., Yoon I.S.
Front Plant Sci 2021 12 797940
The Rice Abscisic Acid-Responsive RING Finger E3 ligase OsRF1 Targets OsPP2C09 for Degradation and Confers Drought and Salinity Tolerance in Rice.
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Chen Y., Dan Z., Gao F., Chen P., Fan F., Li S.
Plant Physiol. 2020
Rice GROWTH-REGULATING FACTOR7 Modulates Plant Architecture through Regulating GA and IAA Metabolism.
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Ge Q., Zhang Y., Xu Y., Bai M., Luo W., Wang B., Niu Y., Zhao Y., Li S., Weng Y., Wang Z., Qian Q., Chong K.
New Phytol. 2020 225(6) 2453-2467
cyclophilin OsCYP20-2 with a novel variant integrates defense and cell elongation for chilling response in rice.
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Lu Y., Feng Z., Meng Y., Bian L., Xie H., Mysore K.S., Liang J.
Plant Physiol. 2020 182(4) 2213-2227
SLENDER RICE1 and <i>Oryza sativa</i> INDETERMINATE DOMAIN2 Regulating OsmiR396 Are Involved in stem elongation.
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Jan R., Khan M.A., Asaf S., Lee I.J., Kim K.M.
Sci Rep 2020 10(1) 14685
Overexpression of OsF3H modulates WBPH stress by alteration of phenylpropanoid pathway at a transcriptomic and metabolomic level in Oryza sativa.
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Mo W., Tang W., Du Y., Jing Y., Bu Q., Lin R.
Plant Physiol. 2020
PHYTOCHROME-INTERACTING FACTOR-LIKE14 and SLENDER RICE1 interaction controls seedling growth under salt stress.
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Wang B., Li J.
Plant Cell 2019 31(7) 1416-1417
Understanding the Molecular Bases of Agronomic Trait Improvement in Rice.
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Yano K., Morinaka Y., Wang F., Huang P., Takehara S., Hirai T., Ito A., Koketsu E., Kawamura M., Kotake K., Yoshida S., Endo M., Tamiya G., Kitano H., Ueguchi-Tanaka M., Hirano K., Matsuoka M.
Proc. Natl. Acad. Sci. U.S.A. 2019 116(42) 21262-21267
GWAS with principal component analysis identifies a gene comprehensively controlling rice architecture.
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Liu M., Shi Z., Zhang X., Wang M., Zhang L., Zheng K., Liu J., Hu X., Di C., Qian Q., He Z., Yang D.L.
Nat Plants 2019 5(4) 389-400
Inducible overexpression of Ideal Plant Architecture1 improves both yield and disease resistance in rice.
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Ke S., Liu S., Luan X., Xie X.M., Hsieh T.F., Zhang X.Q.
Rice (N Y) 2019 12(1) 7
Mutation in a putative glycosyltransferase-like gene causes programmed cell death and early leaf senescence in rice.
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Yoshida H., Tanimoto E., Hirai T., Miyanoiri Y., Mitani R., Kawamura M., Takeda M., Takehara S., Hirano K., Kainosho M., Akagi T., Matsuoka M., Ueguchi-Tanaka M.
Proc. Natl. Acad. Sci. U.S.A. 2018 115(33) E7844-E7853
Evolution and diversification of the plant gibberellin receptor GID1.
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Li S., Tian Y., Wu K., Ye Y., Yu J., Zhang J., Liu Q., Hu M., Li H., Tong Y., Harberd N.P., Fu X.
Nature 2018 560(7720) 595-600
Modulating plant growth-metabolism coordination for sustainable agriculture.
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Zhang Y., Liu K., Zhu X., Wu Y., Zhang S., Chen H., Ling J., Wang Y., Fang X.
Plant Cell Rep. 2018 37(5) 775-787
Rice tocopherol deficiency 1 encodes a homogentisate phytyltransferase essential for tocopherol biosynthesis and plant development in rice.
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Burman N., Bhatnagar A., Khurana J.P.
Plant Physiol. 2017
OsbZIP48, a HY5 transcription factor ortholog, exerts pleiotropic effects in light-regulated development.
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Hirano K., Yoshida H., Aya K., Kawamura M., Hayashi M., Hobo T., Sato-Izawa K., Kitano H., Ueguchi-Tanaka M., Matsuoka M.
Mol Plant 2017 10(4) 590-604
SMALL ORGAN SIZE 1 and SMALL ORGAN SIZE 2/DWARF AND LOW-TILLERING Form a Complex to Integrate Auxin and Brassinosteroid Signaling in Rice.
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Tong H., Chu C.
Plant Cell 2016 28(4) 833-5
Reply: Brassinosteroid Regulates Gibberellin Synthesis to Promote Cell Elongation in Rice: Critical Comments on Ross and Quittenden's Letter.
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Singh P., Sinha A.K.
Plant Cell 2016
A Positive Feedback Loop Governed by SUB1A1 Interaction with MITOGEN ACTIVATED PROTEIN KINASE 3 Imparts submergence tolerance in Rice.
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Zhu N., Cheng S., Liu X., Du H., Dai M., Zhou D.X., Yang W., Zhao Y.
Plant Sci. 2015 236 146-56
The R2R3-type MYB gene OsMYB91 has a function in coordinating plant growth and salt stress tolerance in rice.
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Ye Y., Liu B., Zhao M., Wu K., Cheng W., Chen X., Liu Q., Liu Z., Fu X., Wu Y.
Plant Mol. Biol. 2015 89(4-5) 385-401
CEF1/OsMYB103L is involved in GA-mediated regulation of secondary wall biosynthesis in rice.
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Liu G., Zhang K., Ai J., Su Y., Deng X., Hong Y., Wang X.
J. Exp. Bot. 2015
Patatin-related phospholipase A, pPLAIIIalpha, modulates the longitudinal growth of vegetative tissues and seeds in rice.
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Huang D., Wang S., Zhang B., Shang-Guan K., Shi Y., Zhang D., Liu X., Wu K., Xu Z., Fu X., Zhou Y.
Plant Cell 2015 27(6) 1681-96
A Gibberellin-Mediated DELLA-NAC Signaling Cascade Regulates Cellulose Synthesis in Rice.
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Wang W., Li G., Zhao J., Chu H., Lin W., Zhang D., Wang Z., Liang W.
PLoS Genet. 2014 10(3) e1004154
DWARF TILLER1, a WUSCHEL-Related Homeobox Transcription Factor, Is Required for Tiller Growth in Rice.
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Zhou W., Malabanan P.B., Abrigo E.
Euphytica 2014 201 97-107
OsHox4 regulates GA signaling by interacting with DELLA-like genes and GA oxidase genes in rice
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Tong H.a, Xiao Y.a, Liu D.a, Gao S.a, Liu L.a, Yin Y.b, Jin Y.c, Qian Q.d, Chu C.a
Plant Cell 2014 26 4376-4393
Brassinosteroid regulates cell elongation by modulating gibberellin metabolism in ricec w open
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Jung K.H., Kim S.R., Giong H.K., Nguyen M.X., Go H.J., An G.
Mol Plant 2014
Genome-wide Identification and Functional Analysis of Genes Expressed Ubiquitously in Rice.
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Zhu,T., Xu,P.Z., Liu,J.P., Peng,S., Mo,X.C. and Gao,L.Z.
Mol. Phylogenet. Evol. 2014 70 348-361
Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions
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Lu Z., Yu H., Xiong G., Wang J., Jiao Y., Liu G., Jing Y., Meng X., Hu X., Qian Q., Fu X., Wang Y., Li J.
Plant Cell 2013 25(10) 3743-59
Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture.
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Yang D.L., Yang Y., He Z.
Mol Plant 2013 6(3) 675-85
Role of plant hormones and their cross-talks in rice immunity.
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Andrieu A., Breitler J.C., Sire C., Meynard D., Gantet P., Guiderdoni E.
Rice (N Y) 2012 5 23
An in planta, Agrobacterium-mediated transient gene expression method for inducing gene silencing in rice (Oryza sativa L.) leaves
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Zhang C.C., Yuan W.Y., Zhang Q.F.
Mol Plant 2012 5(2) 482-93
RPL1, a Gene Involved in Epigenetic Processes Regulates Phenotypic Plasticity in Rice.
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Bhattacharyya J., Chowdhury A.H., Ray S., Jha J.K., Das S., Gayen S., Chakraborty A., Mitra J., Maiti M.K., Basu A., Sen S.K.
Plant Cell Rep. 2012 31(2) 271-9
Native polyubiquitin promoter of rice provides increased constitutive expression in stable transgenic rice plants.
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Yang D.L., Yao J., Mei C.S., Tong X.H., Zeng L.J., Li Q., Xiao L.T., Sun T.P., Li J., Deng X.W., Lee C.M., Thomashow M.F., Yang Y., He Z., He S.Y.
Proc. Natl. Acad. Sci. U.S.A. 2012 109(19) E1192-200
Plant hormone jasmonate prioritizes defense over growth by interfering with gibberellin signaling cascade.
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Hirano K., Kouketu E., Katoh H., Aya K., Ueguchi-Tanaka M., Matsuoka M.
Plant J. 2012 71(3) 443-53
The Suppressive Function of the Rice DELLA Protein SLR1 is Dependent on its Transcriptional Activation Activity.
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Mimura M., Nagato Y., Itoh J.I.
Planta 2012 235(5) 1081-9
Rice PLASTOCHRON genes regulate leaf maturation downstream of the gibberellin signal transduction pathway.
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Hirose F., Inagaki N., Hanada A., Yamaguchi S., Kamiya Y., Miyao A., Hirochika H., Takano M.
Plant Cell Physiol. 2012 53(9) 1570-82
Cryptochrome and Phytochrome Cooperatively but Independently Reduce Active Gibberellin Content in Rice Seedlings under Light Irradiation.
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Phanchaisri B., Samsang N., Yu L., Singkarat S., Anuntalabhochai S.
Mutat. Res. 2012 734(1-2) 56-61
Expression of OsSPY and 14-3-3 genes involved in plant height variations of ion-beam-induced KDML 105 rice mutants.
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Amber L Hauvermale, Ariizumi T., Camille M Steber
Plant Physiol. 2012 160(1) 83-92
Gibberellin signaling: a theme and variations on DELLA repression.
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Wang F., Xing Wang Deng
Cell Res. 2011 21(9) 1286-94
Plant ubiquitin-proteasome pathway and its role in gibberellin signaling.
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Dai C., Hong-Wei Xue
The EMBO journal 2010 29(11) 1916-27
Rice early flowering1, a CKI, phosphorylates DELLA protein SLR1 to negatively regulate gibberellin signalling.
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Wang L,Wang Z,Xu Y,Joo SH,Kim SK,Xue Z,Xu Z,Wang Z,Chong K
Plant J. 2009 57 498-510
OsGSR1 is involved in crosstalk between gibberellins and brassinosteroids in rice.
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Aleman L,Kitamura J,Abdel-mageed H,Lee J,Sun Y,Nakajima M,Ueguchi-Tanaka M,Matsuoka M,Allen RD
Plant Mol. Biol. 2008 68 1-16
Functional analysis of cotton orthologs of GA signal transduction factors GID1 and SLR1.
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Fukao T., Julia Bailey-Serres
Proc. Natl. Acad. Sci. U.S.A. 2008 105(43) 16814-9
submergence tolerance conferred by Sub1A is mediated by SLR1 and SLRL1 restriction of gibberellin responses in rice.
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Ueguchi-Tanaka M,Hirano K,Hasegawa Y,Kitano H,Matsuoka M
Plant Cell 2008 20 2437-46
Release of the repressive activity of rice DELLA protein SLR1 by gibberellin does not require SLR1 degradation in the gid2 mutant.
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Liu T,Gu JY,Xu CJ,Gao Y,An CC
Biochem. Biophys. Res. Commun. 2007 358 983-9
Overproduction of OsSLRL2 alters the development of transgenic Arabidopsis plants.
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Ueguchi-Tanaka,M., Nakajima,M., Katoh,E., Ohmiya,H., Asano,K., Saji,S., Hongyu,X., Ashikari,M., Kitano,H., Yamaguchi,I. and Matsuoka,M.
Plant Cell 2007 19(7) 2140-2155
Molecular interactions of a soluble gibberellin receptor, GID1, with a rice DELLA protein, SLR1, and gibberellin
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Eckardt NA
Plant Cell 2007 19 2095-7
GA perception and signal transduction: molecular interactions of the GA receptor GID1 with GA and the DELLA protein SLR1 in rice.
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Chhun T,Aya K,Asano K,Yamamoto E,Morinaka Y,Watanabe M,Kitano H,Ashikari M,Matsuoka M,Ueguchi-Tanaka M
Plant Cell 2007 19 3876-88
Gibberellin regulates pollen viability and pollen tube growth in rice.
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Shimada A, Ueguchi-Tanaka M, Sakamoto T, Fujioka S, Takatsuto S, Yoshida S, Sazuka T, Ashikari M, Matsuoka M.
Plant J. 2006 48(3) 390-402
The rice SPINDLY gene functions as a negative regulator of gibberellin signaling by controlling the suppressive function of the DELLA protein, SLR1, and modulating brassinosteroid synthesis.
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Cao D, Cheng H, Wu W, Soo HM, Peng J.
Plant Physiol. 2006 142(2) 509-25
Gibberellin mobilizes distinct DELLA-dependent transcriptomes to regulate seed germination and floral development in Arabidopsis.
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Itoh H., Shimada A., Miyako Ueguchi-Tanaka, Kamiya N., Hasegawa Y., Ashikari M., Matsuoka M.
Plant J. 2005 44(4) 669-79
Overexpression of a GRAS protein lacking the DELLA domain confers altered gibberellin responses in rice.
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Han,Y., Jiang,J., Liu,H., Ma,Q., Xu,W., Xu,Y., Xu,Z. and Chong,K.
Plant Sci. 2005 169(3) 487-495
Overexpression of OsSIN, encoding a novel small protein, causes short internodes in Oryza sativa
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Gomi, K., A. Sasaki, H. Itoh, M. Ueguchi-Tanaka, M. Ashikari, H. Kitano and M. Matsuoka
Plant J. 2004 37 (4) 626-634
GID2, an F-box subunit of the SCF E3 complex, specifically interacts with phosphorylated SLR1 protein and regulates the gibberellin-dependent degradation of SLR1 in rice.
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Tian C, Wan P, Sun S, Li J, Chen M.
Plant Mol. Biol. 2004 54 519-532
Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.
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Kaneko, M., H. Itoh, Y. Inukai, T. Sakamoto, M. Ueguchi-Tanaka, M. Ashikari and M. Matsuoka
Plant J. 2003 35 (1) 104-115
Where do gibberellin biosynthesis and gibberellin signaling occur in rice plants?
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Sasaki, A., H. Itoh, K. Gomi, M. Ueguchi-Tanaka, K. Ishiyama, M. Kobayashi, D.H. Jeong, G. An, H. Kitano, M. Ashikari, M. Matsuoka
Science 2003 299 (5614) 1896-1898
Accumulation of phosphorylated repressor for gibberellin signaling in an F-box mutant.
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Ikeda, A., Y. Sonoda, P. Vernieri, P. Perata, H. Hirochika and J. Yamaguchi
Plant Cell Physiol. 2002 43 974-979.
The slender rice mutant, with constitutively activated gibberellin signal transduction, has enhanced capacity for abscisic acid level.
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Itoh,H., Ueguchi-Tanaka,M., Sato,Y., Ashikari,M. and Matsuoka,M.
Plant Cell 2002 14(1) 57-70
The gibberellin signaling pathway is regulated by the appearance and disappearance of SLENDER RICE1 in nuclei.
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Ikeda, A., M. Ueguchi-Tanaka, Y. Sonoda, H. Kitano, M. Koshioka, Y. Futsuhara, M. Matsoka, and J. Yamaguchi
Plant Cell 2001 13 999-1010
slender rice, a constitutive gibberellin response mutant, is caused by a null mutation of the SLR1 gene, an ortholog of the height-regulating gene GAI/RGA/RHT/D8.
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Ogawa,M., Kusano,T., Katsumi,M. and Sano,H.
Gene 2000 245(1) 21-29
Rice gibberellin-insensitive gene homolog, OsGAI, encodes a nuclear-localized protein capable of gene activation at transcriptional level.
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Ikeda, A., S. Tanaka, J. Yamaguchi, and Y. Futsuhara
Sci. Rep. Fac. Agric. Meijo Univ. 1999 35 7-13
Character expression and mode of inheritance of a slender mutant with constitutive gibberellin-response in rice. [Japanese]
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TextPresso Search
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Search textpresso for SLR1
( Recent references may be retrievable, but without any warranty )
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DB Reference
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Gramene ID
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GR:0061384
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Ontologies
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Gene Ontology
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defense response to bacterium( GO:0042742 )
defense response to fungus( GO:0050832 )
response to abscisic acid stimulus( GO:0009737 )
response to gibberellin stimulus( GO:0009739 )
regulation of cell proliferation( GO:0042127 )
defense response to insect( GO:0002213 )
response to flooding( GO:0009413 )
regulation of growth( GO:0040008 )
root development( GO:0048364 )
response to light stimulus( GO:0009416 )
nucleus( GO:0005634 )
transcription( GO:0006350 )
response to salt stress( GO:0009651 )
gibberellic acid mediated signaling( GO:0009740 )
negative regulation of gibberellic acid mediated signaling( GO:0009938 )
regulation of gene expression( GO:0010468 )
regulation of transcription( GO:0045449 )
negative regulation of growth( GO:0045926 )
regulation of nitrogen compound metabolic process( GO:0051171 )
response to cold( GO:0009409 )
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Trait Ontology
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salt tolerance( TO:0006001 )
stem length( TO:0000576 )
plant growth hormone sensitivity( TO:0000401 )
root length( TO:0000227 )
internode length( TO:0000145 )
leaf shape( TO:0000492 )
plant height( TO:0000207 )
root number( TO:0000084 )
disease resistance( TO:0000112 )
gibberellic acid sensitivity( TO:0000166 )
anatomy and morphology related trait( TO:0000017 )
submergence sensitivity( TO:0000286 )
cold tolerance( TO:0000303 )
light sensitivity( TO:0000075 )
white-backed planthopper resistance( TO:0000205 )
stem elongation( TO:0006036 )
bacterial blight disease resistance( TO:0000175 )
abscisic acid sensitivity( TO:0000615 )
sheath blight disease resistance( TO:0000255 )
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Plant Ontology
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whole plant( PO:0000003 )
root( PO:0009005 )
shoot system( PO:0009006 )
vascular leaf( PO:0009025 )
stem internode( PO:0020142 )
stem elongation stage( PO:0007089 )
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Related Strains
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Phenotype images
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Last updated
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Jun 2, 2022
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