Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PS
Gene Symbol Synonym Ra*, bhlh13, OsbHLH013, OsbHLH13, Ra, OSB1, Ra1, OsGL3A, GL3A, OsB2, OsMYC7, MYC7, OsPs, Ps, OsHLH1, HLH1
Gene Name Synonym Rice R gene (Anthocyanin biosynthesis) : a, basic helix loop helix 13, Rice R gene (Anthocyanin biosynthesis)-a, GLABRA3A, GLABRA 3A, Myelocytomatosis oncogene transcription factor 7, purple stigma
Allele hlh1-1, hlh1-2, hlh1-3
Chromosome No. 4
Explanation U39860 (Genetics. 1996 Mar;142)3):1021-31.). AB021079. GRO:0007044; 06-heading stage ; GRO:0007042: 08-dough stage ; GRO:0007045: 09-mature grain stage ; GRO:0007046: 07-milk stage. an R/B-type regulatory gene. OSB1 is an allele of the functional rice Ra1 gene previously reported by Hu et al. (1996) (Shih et al. 2008). OSB1 (Os04g0557800) and OSB2 (Os04g0557500) are the major components of the Plw allele (Sakamoto et al. 2001). a homologue of Arabidopsis transcription factor GL3. OsB2 in Kim et al. 2018,
Trait Class Coloration - Anthocyanin
Seed - Morphological traits
cDNA Accession No. U39860
MSU ID LOC_Os04g47080.1
RAP ID Os04g0557800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Zheng K., Wang X., Wang Y., Wang S.
BMC Plant Biol. 2021  21(1)  234
Conserved and non-conserved functions of the rice homologs of the Arabidopsis trichome initiation-regulating MBW complex proteins.
Meng L., Qi C., Wang C., Wang S., Zhou C., Ren Y., Cheng Z., Zhang X., Guo X., Zhao Z., Wang J., Lin Q., Zhu S., Wang H., Wang Z., Lei C., Wan J.
Rice (N Y) 2021  14(1)  37
Determinant Factors and Regulatory Systems for Anthocyanin Biosynthesis in Rice Apiculi and Stigmas.
Chen S., Zhao H., Luo T., Liu Y., Nie X., Li H.
Plants (Basel) 2019  8(8) 
Characteristics and Expression Pattern of <i>MYC</i> Genes in <i>Triticum aestivum</i>, <i>Oryza sativa</i>, and <i>Brachypodium distachyon</i>.
Kim D.H., Park S., Lee J.Y., Ha S.H., Lee J.G., Lim S.H.
Int J Mol Sci 2018  19(8) 
A Rice B-Box Protein, OsBBX14, Finely Regulates Anthocyanin Biosynthesis in Rice.
Zheng K., Tian H., Hu Q., Guo H., Yang L., Cai L., Wang X., Liu B., Wang S.
Sci Rep 2016  6  19254
Ectopic expression of R3 MYB transcription factor gene OsTCL1 in Arabidopsis, but not rice, affects trichome and root hair formation.
Shih CH, Chu H, Tang LK, Sakamoto W, Maekawa M, Chu IK, Wang M, Lo C.
Planta. 2008  228(6)  1043-54.
Functional characterization of key structural genes in rice flavonoid biosynthesis.
Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D.
Plant Physiol. 2006  141(4)  1167-84
Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.
W Sakamoto, T Ohmori, K Kageyama, C Miyazaki, A Saito, M Murata, K Noda, M Maekawa
Plant Cell Physiol. 2001  42(9)  982-91
The Purple leaf (Pl) locus of rice: the Pl(w) allele has a complex organization and includes two genes encoding basic helix-loop-helix proteins involved in anthocyanin biosynthesis.
Hu,J., Anderson,B. and Wessler,S.R.
Genetics 1996  142(3)  1021-1031
Isolation and characterization of rice R genes: evidence for distinct evolutionary paths in rice and maize.
TextPresso Search Search textpresso for PS ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060719
Gene Ontology flavonoid metabolic process( GO:0009812 )
positive regulation of anthocyanin biosynthetic process( GO:0031542 )
nucleus( GO:0005634 )
mitochondrion( GO:0005739 )
plastid( GO:0009536 )
protein dimerization activity( GO:0046983 )
Trait Ontology seed coat color( TO:0000190 )
endosperm color( TO:0000487 )
anthocyanin content( TO:0000071 )
stigma color( TO:0000185 )
Plant Ontology seed coat( PO:0009088 )
endosperm( PO:0009089 )
seed maturation stage( PO:0007632 )
stem( PO:0009047 )
stigma( PO:0009073 )
Related Strains
Phenotype images
Last updated
Sep 14, 2021