Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol PDC1
Gene Symbol Synonym pdc1*, pdc1, pdc4, pdc 1, PDC 1, OsPDC1
CGSNL Gene Name PYRUVATE DECARBOXYLASE 1
Gene Name Synonym pyruvate decarboxylase-1, Pyruvate decarboxylase isozyme 1, Pyruvate Decarboxylase 1
Protein Name PYRUVATE DECARBOXYLASE 1
Allele
Chromosome No. 5
Explanation This gene is located between two RFLP markers, BCD454A and RZ67 on chromosome 5. EC=4.1.1.1 Q0DHF6(japonica). A2Y5L9(indica). U07339. U26660. D10413. D22926.
Trait Class Biochemical character
Reproductive organ - panicle
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK100678
MSU ID LOC_Os05g39310.1
RAP ID Os05g0469600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Map
Locate(cM)
Link map Classical linkage map
References
Kaspary T.E., Roma-Burgos N., Merotto A.
Genes (Basel) 2020  11(9) 
Snorkeling Strategy: Tolerance to Flooding in Rice and Potential Application for Weed Management.
Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.
Gene 2018  675  285-300
Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).
Tsuji H, Saika H, Tsutsumi N, Hirai A, Nakazono M.
Plant Cell Physiol. 2006  47(7)  995-1003
Dynamic and reversible changes in histone H3-Lys4 methylation and H3 acetylation occurring at submergence-inducible genes in rice.
Huq, E., S. Harrington, M.A. Hossain, F. Wen, S.R. McCouch and T.K. Hodges
Theor. Appl. Genet. 1999  98  815-824
Molecular characterization of pdc2 and mapping of three pdc genes from rice.
Hossain,M.A., Huq,E., Grover,A., Dennis,E.S., Peacock,W.J. and Hodges,T.K.
Plant Mol. Biol. 1996  31(4)  761-770
Characterization of pyruvate decarboxylase genes from rice.
Umeda,M., Hara,C., Matsubayashi,Y., Li,H.H., Liu,Q., Tadokoro,F., Aotsuka,S. and Uchimiya,H.
Plant Mol. Biol. 1994  25(3)  469-478
Expressed sequence tags from cultured cells of rice (Oryza sativa L.) under stressed conditions: analysis of transcripts of genes engaged in ATP-generating pathways.
Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994  6(4)  615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
Hossain,M.A., Huq,E., Hodges,T.K. and E.
Plant Physiol. 1994  106(2)  799-800
Sequence of a cDNA from Oryza sativa (L.) encoding the pyruvate decarboxylase 1 gene.
Uchimiya,H., Kidou,S., Shimazaki,T., Aotsuka,S., Takamatsu,S., Nishi,R., Hashimoto,H., Matsubayashi,Y., Kidou,N., Umeda,M. and Kato,A.
Plant J. 1992  2(6)  1005-1009
Random sequencing og cDNA librariesreveals a variety of expressed genes in cultured cells of rice (Oryza sativa L.)
TextPresso Search Search textpresso for PDC1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060607
Ontologies
Gene Ontology response to flooding( GO:0009413 )
magnesium ion binding( GO:0000287 )
thiamin pyrophosphate binding( GO:0030976 )
plastid( GO:0009536 )
pyruvate decarboxylase activity( GO:0004737 )
inflorescence development( GO:0010229 )
Trait Ontology inflorescence development trait( TO:0000621 )
flooding related trait( TO:0000114 )
Plant Ontology inflorescence development stage( PO:0001083 )
Related Strains
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Phenotype images
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Last updated
Jul 5, 2022


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