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Basic Information
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CGSNL Gene Symbol
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PDC1
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Gene Symbol Synonym
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pdc1*, pdc1, pdc4, pdc 1, PDC 1, OsPDC1
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CGSNL Gene Name
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PYRUVATE DECARBOXYLASE 1
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Gene Name Synonym
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pyruvate decarboxylase-1, Pyruvate decarboxylase isozyme 1, Pyruvate Decarboxylase 1
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Protein Name
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PYRUVATE DECARBOXYLASE 1
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Allele
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Chromosome No.
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5
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Explanation
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This gene is located between two RFLP markers, BCD454A and RZ67 on chromosome 5. EC=4.1.1.1 Q0DHF6(japonica). A2Y5L9(indica). U07339. U26660. D10413. D22926.
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Trait Class
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Biochemical character
Reproductive organ - panicle
Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK100678
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MSU ID
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LOC_Os05g39310.1
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RAP ID
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Os05g0469600
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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Link to INSD Accession List
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Kaspary T.E., Roma-Burgos N., Merotto A.
Genes (Basel) 2020 11(9)
Snorkeling Strategy: Tolerance to Flooding in Rice and Potential Application for Weed Management.
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Ke S., Liu X.J., Luan X., Yang W., Zhu H., Liu G., Zhang G., Wang S.
Gene 2018 675 285-300
Genome-wide transcriptome profiling provides insights into panicle development of rice (Oryza sativa L.).
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Tsuji H, Saika H, Tsutsumi N, Hirai A, Nakazono M.
Plant Cell Physiol. 2006 47(7) 995-1003
Dynamic and reversible changes in histone H3-Lys4 methylation and H3 acetylation occurring at submergence-inducible genes in rice.
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Huq, E., S. Harrington, M.A. Hossain, F. Wen, S.R. McCouch and T.K. Hodges
Theor. Appl. Genet. 1999 98 815-824
Molecular characterization of pdc2 and mapping of three pdc genes from rice.
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Hossain,M.A., Huq,E., Grover,A., Dennis,E.S., Peacock,W.J. and Hodges,T.K.
Plant Mol. Biol. 1996 31(4) 761-770
Characterization of pyruvate decarboxylase genes from rice.
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Umeda,M., Hara,C., Matsubayashi,Y., Li,H.H., Liu,Q., Tadokoro,F., Aotsuka,S. and Uchimiya,H.
Plant Mol. Biol. 1994 25(3) 469-478
Expressed sequence tags from cultured cells of rice (Oryza sativa L.) under stressed conditions: analysis of transcripts of genes engaged in ATP-generating pathways.
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Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994 6(4) 615-624
Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
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Hossain,M.A., Huq,E., Hodges,T.K. and E.
Plant Physiol. 1994 106(2) 799-800
Sequence of a cDNA from Oryza sativa (L.) encoding the pyruvate decarboxylase 1 gene.
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Uchimiya,H., Kidou,S., Shimazaki,T., Aotsuka,S., Takamatsu,S., Nishi,R., Hashimoto,H., Matsubayashi,Y., Kidou,N., Umeda,M. and Kato,A.
Plant J. 1992 2(6) 1005-1009
Random sequencing og cDNA librariesreveals a variety of expressed genes in cultured cells of rice (Oryza sativa L.)
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DB Reference
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Gramene ID
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GR:0060607
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Ontologies
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Gene Ontology
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response to flooding( GO:0009413 )
magnesium ion binding( GO:0000287 )
thiamin pyrophosphate binding( GO:0030976 )
plastid( GO:0009536 )
pyruvate decarboxylase activity( GO:0004737 )
inflorescence development( GO:0010229 )
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Trait Ontology
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inflorescence development trait( TO:0000621 )
flooding related trait( TO:0000114 )
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Plant Ontology
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inflorescence development stage( PO:0001083 )
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Related Strains
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Phenotype images
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Last updated
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Jul 5, 2022
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Update info.