Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol GD1
Gene Symbol Synonym OsGD1, OsVAL1, VAL1, DLN186, OsDLN186
CGSNL Gene Name GERMINATION DEFECTIVE 1
Gene Name Synonym germination-defective1, DLN repressor 186, DLN motif protein 186
Protein Name
Allele gd1
Chromosome No. 7
Explanation a B3 domain transcriptional repressor. a homolog of Arabidopsis VAL genes. Q0D5G4. GO:1900140: regulation of seedling development.
Trait Class Vegetative organ - Culm
Tolerance and resistance - Stress tolerance
Reproductive organ - Spikelet, flower, glume, awn
Other
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os07g37610.1
RAP ID Os07g0563300
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Li Y., Guo D.
Int J Mol Sci 2023  24(4) 
Transcriptome and DNA Methylome Analysis of Two Contrasting Rice Genotypes under Salt Stress during Germination.
Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019  20(7) 
Analysis of Rice Proteins with DLN repressor Motif/S.
Xie Y., Zhang Y., Han J., Luo J., Li G., Huang J., Wu H., Tian Q., Zhu Q., Chen Y., Kawano Y., Liu Y.G., Chen L.
Mol Plant 2018  11(5)  720-735
The Intronic cis Element SE1 Recruits trans-Acting Repressor Complexes to Repress the Expression of ELONGATED UPPERMOST INTERNODE1 in Rice.
Guo X., Hou X., Fang J., Wei P., Xu B., Chen M., Feng Y., Chu C.
Plant J. 2013  75(3)  403-16
The rice GERMINATION DEFECTIVE1, encoding a B3 domain transcriptional repressor, regulates seed germination and seedling development by integrating GA and carbohydrate metabolism.
DB Reference
Gramene ID -
Ontologies
Gene Ontology DNA binding( GO:0003677 )
nucleus( GO:0005634 )
transcription, DNA-dependent( GO:0006351 )
regulation of transcription, DNA-dependent( GO:0006355 )
zinc ion binding( GO:0008270 )
leaf development( GO:0048366 )
carbohydrate homeostasis( GO:0033500 )
transcription repressor activity( GO:0016564 )
regulation of seed germination( GO:0010029 )
flower development( GO:0009908 )
response to carbohydrate stimulus( GO:0009743 )
gibberellin metabolic process( GO:0009685 )
response to salt stress( GO:0009651 )
Trait Ontology plant height( TO:0000207 )
flower development trait( TO:0000622 )
gibberellic acid content( TO:0002675 )
starch content( TO:0000696 )
sugar content( TO:0000333 )
salt tolerance( TO:0006001 )
Plant Ontology 0 seed germination stage( PO:0007057 )
seedling development stage( PO:0007131 )
flower development stage( PO:0007615 )
Related Strains
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Phenotype images
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Last updated
Jun 20, 2023

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