Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol GATA28
Gene Symbol Synonym OsGATA28
CGSNL Gene Name GATA TRANSCRIPTION FACTOR 28
Gene Name Synonym GATA transcription factor 28, GATA factor 28
Protein Name GATA TRANSCRIPTION FACTOR 28
Allele
Chromosome No. 11
Explanation LOC_Os11g08410. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding.
Trait Class Vegetative organ - Culm
Reproductive organ - Heading date
Reproductive organ - panicle
Other
Expression
Sequence/Locus
cDNA Accession No. -
MSU ID LOC_Os11g08410.1
RAP ID Os11g0187200
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Gupta P., Nutan K.K., Singla-Pareek SL., Pareek A.
Front Plant Sci 2017  8  1944
Abiotic Stresses Cause Differential Regulation of Alternative Splice Forms of GATA Transcription Factor in Rice.
Yano K., Yamamoto E., Aya K., Takeuchi H., Lo P.C., Hu L., Yamasaki M., Yoshida S., Kitano H., Hirano K., Matsuoka M.
Nat. Genet. 2016  48(8)  927-34
Genome-wide association study using whole-genome sequencing rapidly identifies new genes influencing agronomic traits in rice.
José C Reyes, M Isabel Muro-Pastor, Francisco J Florencio
Plant Physiol. 2004  134(4)  1718-32
The GATA family of transcription factors in Arabidopsis and rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology chromatin binding( GO:0003682 )
nucleus( GO:0005634 )
transcription factor complex( GO:0005667 )
transcription from RNA polymerase II promoter( GO:0006366 )
zinc ion binding( GO:0008270 )
cell differentiation( GO:0030154 )
positive regulation of transcription from RNA polymerase II promoter( GO:0045944 )
regulation of photoperiodism, flowering( GO:2000028 )
Trait Ontology flowering time( TO:0002616 )
days to heading( TO:0000137 )
plant height( TO:0000207 )
panicle length( TO:0000040 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Jul 9, 2018

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