Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | GATA8 |
| Gene Symbol Synonym | OsGATA8, OsGATA14, GATA14, OsGATA8a, OsGATA8b, DLN10, OsDLN10 |
| CGSNL Gene Name | GATA TRANSCRIPTION FACTOR 8 |
| Gene Name Synonym | GATA transcription factor 8, GATA factor 8, DLN repressor 10, DLN motif protein 10 |
| Protein Name | GATA TRANSCRIPTION FACTOR 8 |
| Allele | OsGATA8-cr1 |
| Chromosome No. | 1 |
| Explanation | LOC_Os01g24070.1 (OsGATA8a), LOC_Os01g24070.2 (OsGATA8b). DAP-seq data: SRR28790977, SRR28790978; RNA-seq data: SRR28799732, SRR28799733, SRR28799734. OsGATA14 in Behringer and Schwechheimer 2015. GO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding. GO:0001085 RNA polymerase II transcription factor binding. GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding. TO:0020096: mineral and ion transport trait. GO:1901698: response to nitrogen compound. TO:0020098: nitrate sensitivity. TO:0020093: nitrogen content. |
| Trait Class |
Vegetative organ - Culm
Character as QTL - Yield and productivity Tolerance and resistance - Stress tolerance Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK067244
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| MSU ID |
LOC_Os01g24070.1
LOC_Os01g24070.2 |
| RAP ID |
Os01g0343300 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Wu W., Dong X., Chen G., Lin Z., Chi W., Tang W., Yu J., Wang S., Jiang X., Liu X., Wu Y., Wang C., Cheng X., Zhang W., Xuan W., Terzaghi W., Ronald P.C., Wang H., Wang C., Wan J.
Nat. Genet. 2024 56(7) 1516-1526 The elite haplotype OsGATA8-H coordinates nitrogen uptake and productive tiller formation in rice.
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Singh P., Mathew I.E., Verma A., Tyagi A.K., Agarwal P.
Int J Mol Sci 2019 20(7) Analysis of Rice Proteins with DLN repressor Motif/S.
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Gupta P., Nutan K.K., Singla-Pareek SL., Pareek A.
Front Plant Sci 2017 8 1944 Abiotic Stresses Cause Differential Regulation of Alternative Splice Forms of GATA Transcription Factor in Rice.
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Behringer C., Schwechheimer C.
Front Plant Sci 2015 6 90 B-GATA transcription factors - insights into their structure, regulation, and role in plant development.
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José C Reyes, M Isabel Muro-Pastor, Francisco J Florencio
Plant Physiol. 2004 134(4) 1718-32 The GATA family of transcription factors in Arabidopsis and rice.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
chromatin binding( GO:0003682 )
nucleus( GO:0005634 ) transcription factor complex( GO:0005667 ) transcription from RNA polymerase II promoter( GO:0006366 ) zinc ion binding( GO:0008270 ) cell differentiation( GO:0030154 ) positive regulation of transcription from RNA polymerase II promoter( GO:0045944 ) response to water deprivation( GO:0009414 ) response to abscisic acid stimulus( GO:0009737 ) response to ammonium ion( GO:0060359 ) response to nitrate( GO:0010167 ) response to nutrient levels( GO:0031667 ) negative regulation of nitrogen utilization( GO:0045847 ) |
| Trait Ontology |
drought tolerance( TO:0000276 )
abscisic acid sensitivity( TO:0000615 ) tiller number( TO:0000346 ) nitrogen sensitivity( TO:0000011 ) panicle to tiller ratio( TO:0000453 ) relative biomass( TO:0000143 ) relative yield( TO:0000153 ) grain yield( TO:0000396 ) total biomass yield( TO:0000457 ) |
| Plant Ontology |
root( PO:0009005 )
bud( PO:0000055 ) shoot apical meristem( PO:0020148 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Sep 24, 2024 | |
