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Basic Information
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CGSNL Gene Symbol
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F3H2
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Gene Symbol Synonym
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OsF3H-2, F3H-2, OsF3H2, FNS1, OsFNS1, OsSAH4, SAH4, OsF3H8, F3H8, OsS5H3, S5H3, OsDMR6-3, DMR6-3
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CGSNL Gene Name
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FLAVANONE 3-HYDROXYLASE 2
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Gene Name Synonym
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Flavanone 3-hydroxylase 2, SA hydroxylase 4, salicylic acid hydroxylase 4, salicylic acid 5-hydroxylase 3, Downy Mildew Resistant 6-3
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Protein Name
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FLAVANONE 3-HYDROXYLASE 2
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Allele
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oss5h3
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Chromosome No.
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10
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Explanation
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Q8W2X5. FNS1 in Liu et al. 2020. OsF3H8 in Wang et al. 2022. TO:0001109: grain color trait. GO:0140426: pathogen-associated molecular pattern receptor signaling pathway. TO:0000975: grain width.
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Trait Class
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Biochemical character
Vegetative organ - Culm
Coloration
Coloration - Anthocyanin
Seed
Seed - Morphological traits
Seed - Morphological traits - Grain shape
Tolerance and resistance - Disease resistance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK061357
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MSU ID
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LOC_Os10g39140.1
LOC_Os10g39140.2
LOC_Os10g39140.3
LOC_Os10g39140.4
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RAP ID
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Os10g0536400
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Liu X., Yu Y., Yao W., Yin Z., Wang Y., Huang Z., Zhou J.Q., Liu J., Lu X., Wang F., Zhang G., Chen G., Xiao Y., Deng H., Tang W.
Plant Biotechnol. J. 2023
CRISPR/Cas9-mediated simultaneous mutation of three salicylic acid 5-hydroxylase (OsS5H) genes confers broad-spectrum disease resistance in rice.
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Wang J., Zhang C., Li Y.
Genes (Basel) 2022 13(3)
Genome-Wide Identification and Expression Profiles of 13 Key Structural Gene Families Involved in the Biosynthesis of Rice Flavonoid Scaffolds.
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Liang B., Wang H., Yang C., Wang L., Qi L., Guo Z., Chen X.
Int J Mol Sci 2022 23(3)
Salicylic Acid Is Required for Broad-Spectrum disease resistance in Rice.
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Yang Z., Li N., Kitano T., Li P., Spindel J.E., Wang L., Bai G., Xiao Y., McCouch S.R., Ishihara A., Zhang J., Yang X., Chen Z., Wei J., Ge H., Jander G., Yan J.
Plant J. 2021 106(5) 1401-1413
Genetic mapping identifies a rice naringenin O-glucosyltransferase that influences insect resistance.
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Liu X.L., Wang L., Wang X.W., Yan Y., Yang X.L., Xie M.Y., Hu Z., Shen X., Ai H., Lin H.H., Xu G.H., Yang J., Sun S.B.
Plant J. 2020 102(1) 53-67
Mutation of the chloroplast-localized phosphate transporter OsPHT2;1 reduces flavonoid accumulation and UV tolerance in rice.
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Zaidi S.H.R., Zakari S.A., Zhao Q., Khan A.R., Shah J.M., Cheng F.
Antioxidants (Basel) 2019 8(11)
Anthocyanin Accumulation in Black Kernel Mutant Rice and its Contribution to ROS Detoxification in Response to High Temperature at the Filling Stage.
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Oshima M., Taniguchi Y., Akasaka M., Abe K., Ichikawa H., Tabei Y., Tanaka J.
Breed. Sci. 2019 69(2) 244-254
Development of a visible marker trait based on leaf sheath-specific anthocyanin pigmentation applicable to various genotypes in rice.
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Chen X., Tao Y., Ali A., Zhuang Z., Guo D., Guo Q., Riaz A., Zhang H., Xu P., Liao Y., Wang J., Sun C., Xiang Q., Wu X.
Int J Mol Sci 2019 20(10)
Transcriptome and Proteome Profiling of Different Colored Rice Reveals Physiological Dynamics Involved in the Flavonoid Pathway.
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Oikawa T., Maeda H., Oguchi T., Yamaguchi T., Tanabe N., Ebana K., Yano M., Ebitani T., Izawa T.
Plant Cell 2015 27(9) 2401-14
The Birth of a Black Rice Gene and Its Local Spread by Introgression.
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Kim JH,Lee YJ,Kim BG,Lim Y,Ahn JH
Mol. Cells 2008 25 312-6
Flavanone 3beta-hydroxylases from rice: key enzymes for favonol and anthocyanin biosynthesis.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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anthocyanin biosynthetic process( GO:0009718 )
flavonol biosynthetic process( GO:0051555 )
seed development( GO:0048316 )
regulation of flavonoid biosynthetic process( GO:0009962 )
salicylic acid catabolic process( GO:0046244 )
response to salicylic acid stimulus( GO:0009751 )
flavone biosynthetic process( GO:0051553 )
defense response to fungus( GO:0050832 )
defense response to bacterium( GO:0042742 )
salicylic acid metabolic process( GO:0009696 )
cytoplasm( GO:0005737 )
response to molecule of bacterial origin( GO:0002237 )
pattern recognition receptor signaling pathway( GO:0002221 )
respiratory burst during defense response( GO:0002679 )
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Trait Ontology
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flavonoid content( TO:0000290 )
seed development trait( TO:0000653 )
bacterial blight disease resistance( TO:0000175 )
blast disease( TO:0000074 )
plant height( TO:0000207 )
grain width( TO:0000402 )
grain thickness( TO:0000399 )
1000-seed weight( TO:0000382 )
seed set percent( TO:0000455 )
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Plant Ontology
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seed development stage( PO:0001170 )
shoot system( PO:0009006 )
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Related Strains
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Phenotype images
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Last updated
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Feb 21, 2025
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Update info.