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Basic Information
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CGSNL Gene Symbol
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F3H1
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Gene Symbol Synonym
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OsF3H-1, F3H-1, OsF3H1, OsF3H, F3H, OsF3H3, F3H3
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CGSNL Gene Name
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FLAVANONE 3-HYDROXYLASE 1
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Gene Name Synonym
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Flavanone 3-hydroxylase 1
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Protein Name
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FLAVANONE 3-HYDROXYLASE 1
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Allele
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Chromosome No.
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4
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Explanation
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CI252891. AL606999 (OSJNBa0084K01.10). GO:1900386: positive regulation of flavonol biosynthetic process. TO:0000739: shoot axis morphology trait. TO:0001109: grain color trait. OsF3H3 in Wang et al. 2022.
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Trait Class
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Vegetative organ - Culm
Reproductive organ - panicle
Coloration - Anthocyanin
Biochemical character
Seed
Seed - Morphological traits
Tolerance and resistance - Insect resistance
Character as QTL - Yield and productivity
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Expression
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Sequence/Locus
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cDNA Accession No.
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-
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MSU ID
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LOC_Os04g56700.1
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RAP ID
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Os04g0662600
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Wu X., Yang L., Han J., Liu H., Chen G., Wang H., Feng X., Zhang W., Liu K., Zhang Z.
BMC Genomics 2025 26(1) 792
Integrated transcriptomic and metabolomic analysis unveils heat-tolerance-associated flavonoid metabolites and genes in the rice REL1-D mutant.
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Li N., Xu Y., Lu Y.
Plants (Basel) 2024 13(8)
A Regulatory Mechanism on Pathways: Modulating Roles of MYC2 and BBX21 in the Flavonoid Network.
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Zou T., Wang X., Sun T., Rong H., Wu L., Deng J., Guo T., Wang H., Wang J., Huang M.
Int J Mol Sci 2023 24(7)
MYB Transcription Factor <i>OsC1PLSr</i> Involves the Regulation of Purple leaf sheath in Rice.
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Wang J., Zhang C., Li Y.
Genes (Basel) 2022 13(3)
Genome-Wide Identification and Expression Profiles of 13 Key Structural Gene Families Involved in the Biosynthesis of Rice Flavonoid Scaffolds.
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Yang X., Wang J., Xia X., Zhang Z., He J., Nong B., Luo T., Feng R., Wu Y., Pan Y., Xiong F., Zeng Y., Chen C., Guo H., Xu Z., Li D., Deng G.
Plant J. 2021 107(1) 198-214
OsTTG1, a WD40 repeat gene, regulates anthocyanin biosynthesis in rice.
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Kim D.H., Yang J., Ha S.H., Kim J.K., Lee J.Y., Lim S.H.
Front Plant Sci 2021 12 765049
An OsKala3, R2R3 MYB TF, Is a Common Key Player for Black Rice Pericarp as Main Partner of an OsKala4, bHLH TF.
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Mackon E., Ma Y., Jeazet Dongho Epse Mackon GC., Usman B., Zhao Y., Li Q., Liu P.
Genes (Basel) 2021 12(4)
Computational and Transcriptomic Analysis Unraveled <i>OsMATE34</i> as a Putative anthocyanin transporter in Black Rice (<i>Oryza sativa</i> L.) Caryopsis.
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Khan A., Jalil S., Cao H., Tsago Y., Sunusi M., Chen Z., Shi C., Jin X.
Plants (Basel) 2020 9(11)
The Purple Leaf (<i>pl6</i>) Mutation Regulates Leaf Color by Altering the Anthocyanin and Chlorophyll Contents in Rice.
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Jan R., Khan M.A., Asaf S., Lee I.J., Kim K.M.
Sci Rep 2020 10(1) 14685
Overexpression of OsF3H modulates WBPH stress by alteration of phenylpropanoid pathway at a transcriptomic and metabolomic level in Oryza sativa.
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Oshima M., Taniguchi Y., Akasaka M., Abe K., Ichikawa H., Tabei Y., Tanaka J.
Breed. Sci. 2019 69(2) 244-254
Development of a visible marker trait based on leaf sheath-specific anthocyanin pigmentation applicable to various genotypes in rice.
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Zheng J., Wu H., Zhu H., Huang C., Liu C., Chang Y., Kong Z., Zhou Z., Wang G., Lin Y., Chen H.
New Phytol. 2019 223(2) 705-721
Determining factors, regulation system, and domestication of anthocyanin biosynthesis in rice leaves.
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Oikawa T., Maeda H., Oguchi T., Yamaguchi T., Tanabe N., Ebana K., Yano M., Ebitani T., Izawa T.
Plant Cell 2015 27(9) 2401-14
The Birth of a Black Rice Gene and Its Local Spread by Introgression.
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Himi E., Maekawa M., Noda K.
Int J Plant Genomics 2011 2011 369460
Differential expression of three flavanone 3-hydroxylase genes in grains and coleoptiles of wheat.
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Shih CH, Chu H, Tang LK, Sakamoto W, Maekawa M, Chu IK, Wang M, Lo C.
Planta. 2008 228(6) 1043-54.
Functional characterization of key structural genes in rice flavonoid biosynthesis.
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Kim JH,Lee YJ,Kim BG,Lim Y,Ahn JH
Mol. Cells 2008 25 312-6
Flavanone 3beta-hydroxylases from rice: key enzymes for favonol and anthocyanin biosynthesis.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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oxidoreductase activity( GO:0016491 )
flavonol biosynthetic process( GO:0051555 )
response to UV-B( GO:0010224 )
naringenin 3-dioxygenase activity( GO:0045486 )
regulation of jasmonic acid biosynthetic process( GO:0080141 )
positive regulation of anthocyanin biosynthetic process( GO:0031542 )
phenylpropanoid metabolic process( GO:0009698 )
defense response to insect( GO:0002213 )
anthocyanin biosynthetic process( GO:0009718 )
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Trait Ontology
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white-backed planthopper resistance( TO:0000205 )
flavonoid content( TO:0000290 )
anthocyanin content( TO:0000071 )
plant height( TO:0000207 )
sucrose content( TO:0000328 )
glucose content( TO:0000300 )
grain weight( TO:0000590 )
spikelet fertility( TO:0000180 )
pericarp color( TO:0000707 )
fructose content( TO:0006005 )
chlorophyll content( TO:0000495 )
panicle length( TO:0000040 )
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Plant Ontology
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seed( PO:0009010 )
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Related Strains
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Phenotype images
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Last updated
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Dec 9, 2025
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Update info.