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Basic Information
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CGSNL Gene Symbol
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YGL9
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Gene Symbol Synonym
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OscpSRP43, cpSRP43, PGL3, OsPGL3, Os YGL9
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CGSNL Gene Name
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YELLOW-GREEN LEAF 9
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Gene Name Synonym
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Chloroplast Signal Recognition Particle 43, chloroplast signal recognition particle 43 KD protein, chloroplast signal recognition particle 43 kDa protein, yellow green leaf 9, pale- green leaf 3
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Protein Name
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Allele
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ygl9, pgl3
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Chromosome No.
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3
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Explanation
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Q8LSQ2. TO:0012004: quantum yield.
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Trait Class
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Vegetative organ - Leaf
Vegetative organ - Culm
Reproductive organ - Heading date
Coloration - Chlorophyll
Coloration - Others
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Character as QTL - Plant growth activity
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK099900
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MSU ID
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LOC_Os03g03990.1
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RAP ID
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Os03g0131900
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Qiu Z., Wen S., Sun P., Chen D., Wang C., Song X., Xiao L., Zhang P., Zhao D., Wen C., Guan P., Du X., Sun Y., Xu C., Song J.
Plants (Basel) 2025 14(2)
RAS, a Pentatricopeptide Repeat Protein, Interacts with OsTRX z to Regulate Chloroplast Gene Transcription and RNA Processing.
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Chang Y., Fang Y., Liu J., Ye T., Li X., Tu H., Ye Y., Wang Y., Xiong L.
Nat Commun 2024 15(1) 5877
Stress-induced nuclear translocation of ONAC023 improves drought and heat tolerance through multiple processes in rice.
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Caddell D., Langenfeld N.J., Eckels M.J., Zhen S., Klaras R., Mishra L., Bugbee B., Coleman-Derr D.
Front Plant Sci 2023 14 1050483
Photosynthesis in rice is increased by CRISPR/Cas9-mediated transformation of two truncated light-harvesting antenna.
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Wang B., Wang Y., Yu W., Wang L., Lan Q., Wang Y., Chen C., Zhang Y.
Biology (Basel) 2022 11(12)
Knocking Out the Transcription Factor OsNAC092 Promoted Rice drought tolerance.
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Shi Y., He Y., Lv X., Wei Y., Zhang X., Xu X., Li L., Wu J.L.
Rice (N Y) 2020 13(1) 54
Chloroplast SRP54s are Essential for Chloroplast Development in Rice.
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Lv X.G., Shi Y.F., Xu X., Wei Y.L., Wang H.M., Zhang X.B., Wu J.L.
PLoS ONE 2015 10(11) e0143249
Oryza sativa Chloroplast Signal Recognition Particle 43 (OscpSRP43) Is Required for Chloroplast Development and Photosynthesis.
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WANG Zhong-wei, ZHANG Tian-quan, XING Ya-di ZENG Xiao-qin, WANG Ling, LIU Zhong-xian, SHI Jun-qiong, ZHU Xiao-yan, MA Ling, LI Yun-Feng, LING Ying-Hua, SANG Xian-chun, HE Guang-Hua
Journal of Integrative Agriculture 2015 15(5) 944-953
YGL9, encoding the putative chloroplast signal recognition particle 43 kDa protein in rice, is involved in chloroplast development
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Ye J., Yang Y.L., Wei X.H., Niu X.J., Wang S., Xu Q., Yuan X.P., Yu H.Y., Wang Y.P., Feng Y., Wang S.
J Zhejiang Univ Sci B 19(4) 263-273
PGL3 is required for chlorophyll synthesis and impacts leaf senescence in rice.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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response to water deprivation( GO:0009414 )
response to heat( GO:0009408 )
absorption of light( GO:0016037 )
regulation of proton transport( GO:0010155 )
response to red light( GO:0010114 )
photoperiodism, flowering( GO:0048573 )
signal recognition particle, chloroplast targeting( GO:0080085 )
signal recognition particle, endoplasmic reticulum targeting( GO:0005786 )
chloroplast thylakoid membrane( GO:0009535 )
response to blue light( GO:0009637 )
response to sucrose stimulus( GO:0009744 )
chloroplast organization( GO:0009658 )
C4 photosynthesis( GO:0009760 )
chloroplast envelope( GO:0009941 )
response to far red light( GO:0010218 )
photosynthesis( GO:0015979 )
cysteine biosynthetic process( GO:0019344 )
pigment metabolic process( GO:0042440 )
protein import into chloroplast thylakoid membrane( GO:0045038 )
protein amino acid autophosphorylation( GO:0046777 )
carotenoid metabolic process( GO:0016116 )
chlorophyll metabolic process( GO:0015994 )
chloroplast( GO:0009507 )
chlorophyll biosynthetic process( GO:0015995 )
leaf senescence( GO:0010150 )
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Trait Ontology
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chloroplast development trait( TO:0002715 )
leaf color( TO:0000326 )
plant height( TO:0000207 )
panicle length( TO:0000040 )
filled grain number( TO:0000447 )
days to heading( TO:0000137 )
chlorophyll-a content( TO:0000293 )
chlorophyll-b content( TO:0000295 )
carotenoid content( TO:0000496 )
hydrogen peroxide content( TO:0000605 )
temperature response trait( TO:0000432 )
leaf senescence( TO:0000249 )
tiller number( TO:0000346 )
chlorophyll content( TO:0000495 )
photosynthetic ability( TO:0000316 )
heat tolerance( TO:0000259 )
drought tolerance( TO:0000276 )
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Plant Ontology
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leaf( PO:0025034 )
leaf sheath( PO:0020104 )
4 leaf senescence stage( PO:0001054 )
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Related Strains
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Phenotype images
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Last updated
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Jun 16, 2025
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Update info.