Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol COLD1
Gene Symbol Synonym OsCOLD1
CGSNL Gene Name CHILLING TOLERANCE DIVERGENCE 1
Gene Name Synonym
Protein Name
Allele cold1-1
Chromosome No. 4
Explanation Q7X7S8. GO:0090279: regulation of calcium ion import. TO:0001150: chilling stress response.
Trait Class Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK318606
MSU ID LOC_Os04g51180.1
LOC_Os04g51180.2
RAP ID Os04g0600800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Kamble N.U.
Plant Cell 2024   
Histone deacetylase OsHDA716 chilling out with OsbZIP46: antagonistically regulating cold stress tolerance in rice.
Hu D., Yao Y., Lv Y., You J., Zhang Y., Lv Q., Li J., Hutin S., Xiong H., Zubieta C., Lai X., Xiong L.
Mol Plant 2024  17(10)  1520-1538
The OsSRO1c-OsDREB2B complex undergoes protein phase transition to enhance cold tolerance in rice.
Sun Y., Xie Z., Jin L., Qin T., Zhan C., Huang J.
Plant Cell 2024   
Histone deacetylase OsHDA716 represses rice chilling tolerance by deacetylating OsbZIP46 to reduce its transactivation function and protein stability.
Islam F., Khan M.S.S., Ahmed S., Abdullah M., Hannan F., Chen J.
Free Radic. Biol. Med. 2023  199  2-16
OsLPXC negatively regulates tolerance to cold stress via modulating oxidative stress, antioxidant defense and JA accumulation in rice.
Ouyang Q., Zhang Y., Yang X., Yang C., Hou D., Liu H., Xu H.
Plants (Basel) 2023  12(15) 
Overexpression of <i>OsPIN9</i> Impairs Chilling Tolerance via Disturbing ROS Homeostasis in Rice.
Xu Q., Wei Q., Kong Y., Zhu L., Tian W., Huang J., Pan L., Jin Q., Zhang J., Zhu C.
Life (Basel) 2022  12(6) 
Unearthing the Alleviatory Mechanisms of Brassinolide in Cold Stress in Rice.
Zhou D., Li T., Yang Y., Qu Z., Ouyang L., Jiang Z., Lin X., Zhu C., Peng L., Fu J., Peng X., Bian J., Tang W., Xu J., He H.
Front Plant Sci 2020  11  782
<i>OsPLS4</i> Is Involved in Cuticular Wax Biosynthesis and Affects leaf senescence in Rice.
Zhao Q., Feng Q., Lu H., Li Y., Wang A., Tian Q., Zhan Q., Lu Y., Zhang L., Huang T., Wang Y., Fan D., Zhao Y., Wang Z., Zhou C., Chen J., Zhu C., Li W., Weng Q., Xu Q., Wang Z.X., Wei X., Han B., Huang X.
Nat. Genet. 2018  50(2)  278-284
Pan-genome analysis highlights the extent of genomic variation in cultivated and wild rice.
Li L.F., Li Y.L., Jia Y., Caicedo A.L., Olsen K.M.
Nat. Genet. 2017  49(5)  811-814
Signatures of adaptation in the weedy rice genome.
Ma Y., Dai X., Xu Y., Luo W., Zheng X., Zeng D., Pan Y., Lin X., Liu H., Zhang D., Xiao J., Guo X., Xu S., Niu Y., Jin J., Zhang H., Xu X., Li L., Wang W., Qian Q., Ge S., Chong K.
Cell 2015  160(6)  1209-21
COLD1 confers chilling tolerance in rice.
DB Reference
Gramene ID -
Ontologies
Gene Ontology regulation of calcium-mediated signaling( GO:0050848 )
calcium ion import( GO:0070509 )
calcium-mediated signaling( GO:0019722 )
response to brassinosteroid stimulus( GO:0009741 )
endoplasmic reticulum membrane( GO:0005789 )
plasma membrane( GO:0005886 )
G-protein coupled receptor protein signaling pathway( GO:0007186 )
response to cold( GO:0009409 )
integral to membrane( GO:0016021 )
GTPase binding( GO:0051020 )
cellular response to cold( GO:0070417 )
Trait Ontology cold tolerance( TO:0000303 )
brassinosteroid sensitivity( TO:0002677 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Feb 23, 2026

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