Gene - Detail

Detail of Gene

Click here for feedback

Basic Information
CGSNL Gene Symbol CRL1
Gene Symbol Synonym crl1, crl1*, ARL1, ARL1/CRL1, OsLBD3-2, LBD3-2, OsCRL1
Gene Name Synonym crown rootless-1, CROWN ROOTLESS1, Crown rootless1, ADVENTITIOUS ROOTLESS1, ADVENTITIOUS ROOTLESS 1, lateral organ boundaries domain 3-2
Allele arl1, crl1
Chromosome No. 3
Explanation Mapped on the short arm of chromosome 3. Lack a crown root when rooting of a seed.CRL1 encodes a member of the plant-specific ASYMMETRIC LEAVES2/LATERAL ORGAN BOUNDARIES protein family.The recessive mutant, crl1, is defective in crown root formation.MNU induced mutant from Taichung 65. LOB domain protein. PO:0009005; root. GRO:0007047; 02-seedling. AB200234. AY736375. ARL1 is an auxin responsive factor involved in auxin-mediated dedifferentiation. KC609184-KC609196 (O. sativa and wild rice species, partial cds). GO:1990110: callus formation. ortholog of Arabidopsis LBD17/LBD29.
Trait Class Vegetative organ - Root
cDNA Accession No. AB200234
MSU ID LOC_Os03g05510.1
RAP ID Os03g0149100
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link to INSD Accession List
Link map Classical linkage map
Mao C., He J., Liu L., Deng Q., Yao X., Liu C., Qiao Y., Li P., Ming F.
Plant Biotechnol. J. 2020  18(2)  429-442
OsNAC2 integrates auxin and cytokinin pathways to modulate rice root development.
Shao Y., Zhou H.Z., Wu Y., Zhang H., Lin J., Jiang X., He Q., Zhu J., Li Y., Yu H., Mao C.
Plant Cell 2019  31(6)  1257-1275
OsSPL3, an SBP-Domain Protein, Regulates crown root Development in Rice.
Zhang Z., Zhao H., Li W., Wu J., Zhou Z., Zhou F., Chen H., Lin Y.
J Integr Plant Biol 2018   
Genome-wide association study of callus induction variation to explore the callus formation mechanism of rice.
Li C., Zou X., Zhang C., Shao Q., Liu J., Liu B., Li H., Zhao T.
PLoS ONE 2016  11(6)  e0156413
OsLBD3-7 Overexpression Induced Adaxially Rolled Leaves in Rice.
Zhao Y., Cheng S., Song Y., Huang Y., Zhou S., Liu X., Zhou D.X.
Plant Cell 2015   
The Interaction between Rice ERF3 and WOX11 Promotes crown root Development by Regulating Gene Expression Involved in Cytokinin Signaling.
Zhu,T., Xu,P.Z., Liu,J.P., Peng,S., Mo,X.C. and Gao,L.Z.
Mol. Phylogenet. Evol. 2014  70  348-361
Phylogenetic relationships and genome divergence among the AA- genome species of the genus Oryza as revealed by 53 nuclear genes and 16 intergenic regions
Steffens B., Kovalev A., Gorb S.N., Sauter M.
Plant Cell 2012  24(8)  3296-306
Emerging Roots Alter Epidermal Cell Fate through Mechanical and Reactive Oxygen Species Signaling.
Jun N., Gaohang W., Zhenxing Z., Huanhuan Z., Yunrong W., Ping W.
Plant J. 2011  68(3)  433-42
Osiaa23-mediated auxin signaling defines postembryonic maintenance of QC in rice.
Kitomi Y. , Ito H. , Hobo T. , Aya K. , Kitano H. , Inukai Y.
Plant J. 2011  67(3)  472-84
The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
Coudert Y., Bès M., Le T.V., Pré M., Guiderdoni E., Gantet P.
BMC Genomics 2011  12  387
Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
Inukai,Y., Sakamoto,T., Ueguchi-Tanaka,M., Shibata,Y., Gomi,K., Umemura,I., Hasegawa,Y., Ashikari,M., Kitano,H. and Matsuoka,M.
Plant Cell 2005  17(5)  1387-1396
Crown rootless1, Which Is Essential for Crown Root Formation in Rice, Is a Target of an AUXIN RESPONSE FACTOR in Auxin Signaling.
Liu,H., Wang,S., Yu,X., Yu,J., He,X., Zhang,S., Shou,H. and Wu,P.
Plant J. 2005  43(1)  47-56
ARL1, a LOB-domain protein required for adventitious root formation in rice
A. Yoshimura and Y. Nagato
RGN 2005  22  6-8
A. Report of the Committee on Gene Symbolization, Nomenclature and Linkage Groups.
Inukai, Y., Y. Shibata, H. Kitano, M. Ashikari and M. Matsuoka
RGN 2002  19  29-31.
Mapping of the CROWN ROOTLESS1 gene, CRL1, by CAPS analysis.
Inukai, Y., M. Miwa, Y. Nagato, H. Kitano and A, Yamauchi
Breeding Science 2001  51  123-129.
Characterization of rice mutants deficient in the formation of crown roots.
Inukai, Y., A. Yamauchi, H. Satoh, Y. Nagato and H. Kitano
RGN 1998  15  88-90
Genetic analysis of induced rice developmental mutants showing radicleless and crown rootless.
Inukai, T., A. Sako, Y. Kishima and Y. Sano
Breeding Science 1998  48(Suppl. 1)  15
Intragenic recombination at the wx locus in rice.
TextPresso Search Search textpresso for CRL1 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID GR:0060175
Gene Ontology organ morphogenesis( GO:0009887 )
tissue development( GO:0009888 )
Trait Ontology root number( TO:0000084 )
root length( TO:0000227 )
callus induction( TO:0000428 )
crown root number( TO:0002685 )
Plant Ontology root( PO:0009005 )
Related Strains
Phenotype images
Last updated
Mar 9, 2020