Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol SPL42
Gene Symbol Synonym PBD, PBGD, HEMC, OsSPL42, OsPBGD, OsPBD
CGSNL Gene Name SPOTTED LEAF 42
Gene Name Synonym Porphobilinogen deaminase, spotted leaf42
Protein Name PORPHOBILINOGEN DEAMINASE
Allele spl42
Chromosome No. 2
Explanation Q6H6D2. GO:2000024: regulation of leaf development. PO:0030123: panicle inflorescence. GO:1900055: regulation of leaf senescence. GO:2000377: regulation of reactive oxygen species biosynthetic process.
Trait Class Biochemical character
Vegetative organ - Leaf
Coloration - Chlorophyll
Tolerance and resistance - Disease resistance
Tolerance and resistance - Stress tolerance
Character as QTL - Plant growth activity
Expression
Sequence/Locus
cDNA Accession No. AK060914
MSU ID LOC_Os02g07230.1
LOC_Os02g07230.2
LOC_Os02g07230.3
RAP ID Os02g0168800
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Liu L., Wang Y., Tian Y., Song S., Wu Z., Ding X., Zheng H., Huang Y., Liu S., Dong X., Wan J., Liu L.
Plants (Basel) 2023  12(2) 
Isolation and Characterization of <i>SPOTTED LEAF42</i> Encoding a Porphobilinogen Deaminase in Rice.
Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018  9  782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
Zhu X., Guo S., Wang Z., Du Q., Xing Y., Zhang T., Shen W., Sang X., Ling Y., He G.
BMC Plant Biol. 2016  16(1)  134
Map-based cloning and functional analysis of ygl8, which controls leaf colour in rice (Oryza sativa).
Inagaki N., Kinoshita K., Kagawa T., Tanaka A., Ueno O., Shimada H., Takano M.
PLoS ONE 2015  10(8)  e0135408
Phytochrome B Mediates the Regulation of Chlorophyll Biosynthesis through Transcriptional Regulation of ChlH and GUN4 in Rice Seedlings.
Kim J.S., Park H.M., Chae S., Lee T.H., Hwang D.J., Oh S.D., Park J.S., Song D.G., Pan C.H., Choi D., Kim Y.H., Nahm B.H., Kim Y.K.
PLoS ONE 2014  9(3)  e90588
A Pepper MSRB2 Gene Confers drought tolerance in Rice through the Protection of Chloroplast-Targeted Genes.
DB Reference
Gramene ID -
Ontologies
Gene Ontology protoporphyrinogen IX biosynthetic process( GO:0006782 )
chloroplast( GO:0009507 )
chlorophyll biosynthetic process( GO:0015995 )
hydroxymethylbilane synthase activity( GO:0004418 )
response to cold( GO:0009409 )
rRNA processing( GO:0006364 )
salicylic acid biosynthetic process( GO:0009697 )
ubiquinone biosynthetic process( GO:0006744 )
photosynthesis, light reaction( GO:0019684 )
positive regulation of transcription, DNA-dependent( GO:0045893 )
aromatic amino acid family biosynthetic process( GO:0009073 )
cell differentiation( GO:0030154 )
cysteine biosynthetic process( GO:0019344 )
defense response, incompatible interaction( GO:0009814 )
isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway( GO:0019288 )
leaf morphogenesis( GO:0009965 )
pentose-phosphate shunt( GO:0006098 )
peptidyl-pyrromethane cofactor linkage( GO:0018160 )
RNA modification( GO:0009451 )
leaf development( GO:0048366 )
regulation of photosynthesis( GO:0010109 )
leaf senescence( GO:0010150 )
chloroplast organization( GO:0009658 )
regulation of defense response( GO:0031347 )
response to heat( GO:0009408 )
Trait Ontology leaf development trait( TO:0000655 )
leaf color( TO:0000326 )
leaf senescence( TO:0000249 )
chlorophyll-a content( TO:0000293 )
chlorophyll-b content( TO:0000295 )
carotenoid content( TO:0000496 )
chloroplast development trait( TO:0002715 )
plant height( TO:0000207 )
panicle length( TO:0000040 )
flag leaf length( TO:0002757 )
seed set percent( TO:0000455 )
heat tolerance( TO:0000259 )
hydrogen peroxide content( TO:0000605 )
Plant Ontology leaf development stage( PO:0001050 )
root( PO:0009005 )
stem( PO:0009047 )
leaf( PO:0025034 )
leaf sheath( PO:0020104 )
inflorescence( PO:0009049 )
4 leaf senescence stage( PO:0001054 )
Related Strains
-
Phenotype images
-
Last updated
Jun 14, 2023

/rice/oryzabase