Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol NPF6.3
Gene Symbol Synonym OsNRT1.1A, NRT1.1A, OsNRT1.1A/ OsNPF6.3, OsNPF6.3
CGSNL Gene Name NRT1/PTR FAMILY 6.3
Gene Name Synonym nitrate transporter 1.1A
Protein Name NRT1/PTR FAMILY 6.3
Allele osnrt1.1a
Chromosome No. 8
Explanation peptide transporter (PTR) gene family. TO:0020100: nitrate uptake. TO:0020098: nitrate sensitivity.
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Character as QTL - Yield and productivity
Character as QTL - Plant growth activity
Expression
Sequence/Locus
cDNA Accession No. AK070077
MSU ID LOC_Os08g05910.1
LOC_Os08g05910.2
RAP ID Os08g0155400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Lu W.C., Zheng X.L., Xiao Y.T., Sun Z.F., Tang Z., Zhao F.J., Huang X.Y.
Int J Mol Sci 2025  26(19) 
Spatiotemporal Transcriptome Profiling Reveals Nutrient Transport Dynamics in Rice Nodes and Roots During Reproductive Development.
Qi J., Yu L., Ding J., Ji C., Wang S., Wang C., Ding G., Shi L., Xu F., Cai H.
Plant Physiol. 2023   
Transcription factor OsSNAC1 positively regulates nitrate transporter gene expression in rice.
Gao J., Ge S., Wang H., Fang Y., Sun L., He T., Cheng X., Wang D., Zhou X., Cai H., Li C., Liu Y., E Y., Meng J., Chen W.
Front Plant Sci 2023  14  1131937
Biochar-extracted liquor stimulates nitrogen related gene expression on improving nitrogen utilization in rice seedling.
Seo J.S., Kim S.H., Shim J.S., Um T., Oh N., Park T., Kim Y.S., Oh S.J., Kim J.K.
Plant Physiol. 2023   
The rice NUCLEAR FACTOR-YA5 and MICRORNA169a module promotes nitrogen utilization during nitrogen deficiency.
Yang X., Xia X., Zeng Y., Nong B., Zhang Z., Wu Y., Tian Q., Zeng W., Gao J., Zhou W., Liang H., Li D., Deng G.
BMC Plant Biol. 2020  20(1)  193
Genome-wide identification of the peptide transporter family in rice and analysis of the PTR expression modulation in two near-isogenic lines with different nitrogen use efficiency.
Wang P., Yamaji N., Inoue K., Mochida K., Ma J.F.
New Phytol. 2020  226(1)  156-169
Plastic transport systems of rice for mineral elements in response to diverse soil environmental changes.
Wang W., Hu B., Li A., Chu C.
J. Exp. Bot. 2019   
NRT1.1 in plants: functions beyond nitrate transporter.
Wang W., Hu B., Yuan D., Liu Y., Che R., Hu Y., Ou S., Liu Y., Zhang Z., Wang H., Li H., Jiang Z., Zhang Z., Gao X., Qiu Y., Meng X., Liu Y., Bai Y., Liang Y., Wang Y., Zhang L., Li L., Sodmergen, Jing H., Li J., Chu C.
Plant Cell 2018  30(3)  638-651
Expression of the Nitrate Transporter Gene <i>OsNRT1.1A/OsNPF6.3</i> Confers High Yield and Early Maturation in Rice.
Plett D., Toubia J., Garnett T., Tester M., Brent N Kaiser, Baumann U.
PLoS ONE 2010  5(12)  e15289
Dichotomy in the NRT gene families of dicots and grass species.
DB Reference
Gramene ID -
Ontologies
Gene Ontology response to nitrate( GO:0010167 )
nitrate assimilation( GO:0042128 )
response to starvation( GO:0042594 )
cellular response to nitrogen starvation( GO:0006995 )
response to nutrient( GO:0007584 )
integral to membrane( GO:0016021 )
oligopeptide transport( GO:0006857 )
transporter activity( GO:0005215 )
response to flooding( GO:0009413 )
regulation of nitrogen utilization( GO:0006808 )
regulation of photoperiodism, flowering( GO:2000028 )
response to ammonium ion( GO:0060359 )
Trait Ontology grain yield( TO:0000396 )
flooding related trait( TO:0000114 )
grain yield per panicle( TO:0000450 )
nitrogen sensitivity( TO:0000011 )
Plant Ontology root( PO:0009005 )
seed development stage( PO:0001170 )
seed maturation stage( PO:0007632 )
endosperm development stage( PO:0007633 )
Related Strains
-
Phenotype images
-
Last updated
Dec 23, 2025

/rice/oryzabase