Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | CTB3 |
| Gene Symbol Synonym | CAMTA, OsCAMTA, qSCT1, OsCAMTA4, CAMTA4, OsCTB3 |
| CGSNL Gene Name | COLD TOLERANCE AT THE BOOTING STAGE 3 |
| Gene Name Synonym | CaM-binding transcription factor homolog, OsCBT homolog, CBT homolog, QTL for seedling cold tolerance on chromosome 1, calmodulin-binding transcription activator, Calmodulin-binding transcriptional activator 4, cold tolerance at the booting stage 3 |
| Protein Name | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR |
| Allele | CTB3-cr1, CTB3-cr2 |
| Chromosome No. | 1 |
| Explanation | one of six rice CBT homologues. OsCAMTA4 in Yu et al. 2024. GO:0001077: transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding. PO:0030123: panicle inflorescence. TO:1000022: anther morphology trait. |
| Trait Class |
Tolerance and resistance - Stress tolerance
Other |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK122110
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| MSU ID |
LOC_Os01g69910.1
LOC_Os01g69910.2 LOC_Os01g69910.3 |
| RAP ID |
Os01g0923600 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
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INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Li J., Guo H., Lou Q., Zeng Y., Guo Z., Xu P., Gu Y., Gao S., Xu B., Han S., Su R., Zou A., Ye W., Zhang M., Li Y., Sun X., Zhang Z., Zhang H., Ma W., Chen C., Li Z., Li J.
Nat Commun 2025 16(1) 1613 Natural variation of indels in the CTB3 promoter confers cold tolerance in japonica rice.
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Yu S., Li S., Wang W., Tang D.
Int J Mol Sci 2024 25(9) oscamta3 Negatively Regulates disease resistance to <i>Magnaporthe oryzae</i> by Associating with OsCAMTAPL in Rice.
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Xiao P., Feng J.W., Zhu X.T., Gao J.
Front Plant Sci 2021 12 758187 Evolution Analyses of CAMTA Transcription Factor in Plants and Its Enhancing Effect on Cold-tolerance.
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Guo H., Zeng Y., Li J., Ma X., Zhang Z., Lou Q., Li J., Gu Y., Zhang H., Li J., Li Z.
Plant Biotechnol. J. 2020 Differentiation, evolution and utilization of natural alleles for cold adaptability at the reproductive stage in rice.
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Kim S.M., Suh J.P., Lee C.K., Lee J.H., Kim Y.G., Jena K.K.
Mol. Genet. Genomics 2014 289(3) 333-43 QTL mapping and development of candidate gene-derived DNA markers associated with seedling cold tolerance in rice (Oryza sativa L.).
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Choi,M.S., Kim,M.C., Yoo,J.H., Moon,B.C., Koo,S.C., Park,B.O., Lee,J.H., Koo,Y.D., Han,H.J., Lee,S.Y., Chung,W.S., Lim,C.O. and Cho,M.J.
J. Biol. Chem. 2005 280(49) 40820-40831 Isolation of a Calmodulin-binding Transcription Factor from Rice (Oryza sativa L.).
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
DNA binding( GO:0003677 )
nucleus( GO:0005634 ) response to cold( GO:0009409 ) sequence-specific DNA binding( GO:0043565 ) positive regulation of transcription from RNA polymerase II promoter( GO:0045944 ) regulation of transcription from RNA polymerase II promoter( GO:0006357 ) transcription cofactor activity( GO:0003712 ) double-stranded DNA binding( GO:0003690 ) calmodulin binding( GO:0005516 ) pollen development( GO:0009555 ) anther development( GO:0048653 ) trehalose metabolism in response to cold stress( GO:0070415 ) |
| Trait Ontology |
cold tolerance( TO:0000303 )
carbohydrate content( TO:0000291 ) sugar content( TO:0000333 ) anther shape( TO:0000214 ) |
| Plant Ontology |
anther( PO:0009066 )
carpel( PO:0009030 ) leaf( PO:0025034 ) root( PO:0009005 ) stem( PO:0009047 ) leaf sheath( PO:0020104 ) booting stage( PO:0007014 ) stem node( PO:0020141 ) inflorescence( PO:0009049 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Jun 23, 2025 | |
