Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol CHX3
Gene Symbol Synonym OsSTA234, STA234, OsCHX03, CHX03, OsCHX3, OsCHX12, CHX12
CGSNL Gene Name CATION/H+ EXCHANGER 3
Gene Name Synonym cation/H+ exchanger 3, cation/H+ exchanger 12
Protein Name CATION/H+ EXCHANGER 3
Allele
Chromosome No. 9
Explanation a mature anther-preferentially expressed gene. OsCHX12 in Islam et al. 2025.
Trait Class Biochemical character
Reproductive organ - Spikelet, flower, glume, awn
Expression
Sequence/Locus
cDNA Accession No. AK069882
AK121270
MSU ID LOC_Os09g37300.1
RAP ID Os09g0545000
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Islam M.S.U., Akter N., Zohra F.T., Rashid S.B., Hasan N., Rahman S.M., Sarkar M.A.R.
PLoS ONE 2025  20(1)  e0317008
Genome-wide identification and characterization of cation-proton antiporter (CPA) gene family in rice (Oryza sativa L.) and their expression profiles in response to phytohormones.
Ling S., Chen C., Wang Y., Sun X., Lu Z., Ouyang Y., Yao J.
BMC Genomics 2015  16  101
The mature anther-preferentially expressed genes are associated with pollen fertility, pollen germination and anther dehiscence in rice.
Sze H., Padmanaban S., Françoise Cellier, Honys D., Ning-Hui Cheng, Kevin W Bock, Genevieve Conéjéro, Li X., Twell D., John M Ward, Kendal D Hirschi
Plant Physiol. 2004  136(1)  2532-47
Expression patterns of a novel AtCHX gene family highlight potential roles in osmotic adjustment and K+ homeostasis in pollen development.
DB Reference
Gramene ID -
Ontologies
Gene Ontology regulation of pH( GO:0006885 )
endomembrane system( GO:0012505 )
solute:hydrogen antiporter activity( GO:0015299 )
monovalent inorganic cation transport( GO:0015672 )
integral to membrane( GO:0016021 )
Trait Ontology -
Plant Ontology anther( PO:0009066 )
flower( PO:0009046 )
Related Strains
-
Phenotype images
-
Last updated
Jun 13, 2025

/rice/oryzabase