Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol ELF4A
Gene Symbol Synonym ELF4_chr.11, OsELF4a, ELF4a, OsELF4-1, ELF4-1
CGSNL Gene Name EARLY FLOWERING 4A
Gene Name Synonym EARLY FLOWERING4-1
Protein Name
Allele Oself4a, Oself4a-1, Oself4a-2
Chromosome No. 11
Explanation a rice ortholog of Arabidopsis gene for circadian clock component. GO:2000028: regulation of photoperiodism, flowering. GO:0071941: nitrogen cycle metabolic process.
Trait Class Reproductive organ - Heading date
Expression
Sequence/Locus
cDNA Accession No. AK068037
MSU ID LOC_Os11g40610.1
LOC_Os11g40610.2
LOC_Os11g40610.3
LOC_Os11g40610.4
LOC_Os11g40610.5
RAP ID Os11g0621500
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Sun Q., Yu Z., Wang X., Chen H., Lu J., Zhao C., Jiang L., Li F., Xu Q., Ma D.
Plant Physiol. 2024  196(3)  1857-1868
EARLY FLOWERING3-1 represses Grain number, plant height, and heading date7 to promote ABC1 REPRESSOR1 and regulate nitrogen uptake in rice.
Cai Z., Zhang Y., Tang W., Chen X., Lin C., Liu Y., Ye Y., Wu W., Duan Y.
Front Plant Sci 2022  13  853042
LUX ARRHYTHMO Interacts With ELF3a and ELF4a to Coordinate Vegetative Growth and Photoperiodic Flowering in Rice.
Matsuzaki J., Kawahara Y., Izawa T.
Plant Cell 2015  27(3)  633-48
Punctual Transcriptional Regulation by the Rice Circadian Clock under Fluctuating Field Conditions.
DB Reference
Gramene ID -
Ontologies
Gene Ontology positive regulation of long-day photoperiodism, flowering( GO:0048578 )
photoperiodism, flowering( GO:0048573 )
rhythmic process( GO:0048511 )
positive regulation of circadian rhythm( GO:0042753 )
entrainment of circadian clock( GO:0009649 )
nucleus( GO:0005634 )
negative regulation of transcription, DNA-dependent( GO:0045892 )
Trait Ontology flowering time( TO:0002616 )
days to heading( TO:0000137 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Mar 16, 2026

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