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Basic Information
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CGSNL Gene Symbol
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SHMT1
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Gene Symbol Synonym
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OsSHM1, SHM1, OsSHMT1, CDM1, OsCDM1, OsSHTM3, SHTM3, OsSHMT, SHMT
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CGSNL Gene Name
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SERINE HYDROXYMETHYLTRANSFERASE 1
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Gene Name Synonym
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serine hydroxymethyltransferase 1, chlorophyll-deficient mutant 1, serine hydroxymethyltransferase-3
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Protein Name
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SERINE HYDROXYMETHYLTRANSFERASE 1
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Allele
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osshm1, oscdm1
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Chromosome No.
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3
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Explanation
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OsSHTM3 in Mishra et al. 2019. GO:1901002: positive regulation of response to salt stress. GO:0035999: tetrahydrofolate interconversion. TO:0006060: leaf chlorosis.
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Trait Class
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Biochemical character
Tolerance and resistance - Stress tolerance
Coloration - Chlorophyll
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK100404
AK060674
AK119226
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MSU ID
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LOC_Os03g52840.1
LOC_Os03g52840.2
LOC_Os03g52840.3
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RAP ID
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Os03g0738400
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Zhou H., Meng F., Jiang W., Lu X., Zhang R., Huang A., Wu K., Deng P., Wang Y., Zhao H., Du Y., Huo J., Du X., Feng N., Zheng D.
Front Plant Sci 2024 15 1416936
Potassium indole-3-butyric acid affects rice's adaptability to salt stress by regulating carbon metabolism, transcription factor genes expression, and biosynthesis of secondary metabolites.
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Pan T., Jin H., Zhou C., Yan M.
Plants (Basel) 2024 13(8)
Rice Serine Hydroxymethyltransferases: Evolution, Subcellular Localization, Function and Perspectives.
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Wang A., Shu X., Jing X., Jiao C., Chen L., Zhang J., Ma L., Jiang Y., Yamamoto N., Li S., Deng Q., Wang S., Zhu J., Liang Y., Zou T., Liu H., Wang L., Huang Y., Li P., Zheng A.
Plant Biotechnol. J. 2021
Identification of rice (Oryza sativa L.) genes involved in sheath blight resistance via a genome-wide association study.
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Fang C., Zhang P., Li L., Yang L., Mu D., Yan X., Li Z., Lin W.
BMC Plant Biol. 2020 20(1) 236
serine hydroxymethyltransferase localised in the endoplasmic reticulum plays a role in scavenging H2O2 to enhance rice chilling tolerance.
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Mishra P., Jain A., Takabe T., Tanaka Y., Negi M., Singh N., Jain N., Mishra V., Maniraj R., Krishnamurthy S.L., Sreevathsa R., Singh N.K., Rai V.
Front Plant Sci 2019 10 217
Heterologous Expression of Serine Hydroxymethyltransferase-3 From Rice Confers Tolerance to Salinity Stress in <i>E. coli</i> and Arabidopsis.
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Sousa R.H.V., Carvalho F.E.L., Lima-Melo Y., Alencar VTCB., Daloso D.M., Margis-Pinheiro M., Komatsu S., Silveira J.A.G.
J. Exp. Bot. 2019 70(2) 627-639
Impairment of peroxisomal APX and CAT activities increases protection of photosynthesis under oxidative stress.
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Liao P.F., Ouyang J.X., Zhang J.J., Yang L., Wang X., Peng X.J., Wang D., Zhu Y.L., Li S.B.
Plant Mol. Biol. 2019 99(3) 193-204
OsDCL3b affects grain yield and quality in rice.
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Fang C., Zhang P., Jian X., Chen W., Lin H., Li Y., Lin W.
Plant Sci. 2017 262 115-126
Overexpression of Lsi1 in cold-sensitive rice mediates transcriptional regulatory networks and enhances resistance to chilling stress.
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Wang D., Liu H., Li S., Zhai G., Shao J., Tao Y.
J Integr Plant Biol 2015
Characterization and molecular cloning of a Serine hydroxymethyltransferase 1 (osshm1) in rice.
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Wu J., Zhang Z., Zhang Q., Han X., Gu X., Lu T.
Front Genet 2015 6 226
The molecular cloning and clarification of a photorespiratory mutant, oscdm1, using enhancer trapping.
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Zhang Y., Sun K., Francisco J Sandoval, Santiago K., Roje S.
Biochem. J. 2010 430(1) 97-105
One-carbon metabolism in plants: characterization of a plastid serine hydroxymethyltransferase.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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photorespiration( GO:0009853 )
chloroplast thylakoid membrane( GO:0009535 )
C4 photosynthesis( GO:0009760 )
response to cold( GO:0009409 )
response to salt stress( GO:0009651 )
hydrogen peroxide catabolic process( GO:0042744 )
endoplasmic reticulum( GO:0005783 )
methyltransferase activity( GO:0008168 )
response to oxidative stress( GO:0006979 )
nucleus( GO:0005634 )
cytoplasm( GO:0005737 )
pyridoxal phosphate binding( GO:0030170 )
L-serine metabolic process( GO:0006563 )
glycine metabolic process( GO:0006544 )
mitochondrion( GO:0005739 )
glycine hydroxymethyltransferase activity( GO:0004372 )
response to cytokinin stimulus( GO:0009735 )
response to abscisic acid stimulus( GO:0009737 )
response to indolebutyric acid stimulus( GO:0080026 )
response to auxin stimulus( GO:0009733 )
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Trait Ontology
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oxidative stress( TO:0002657 )
leaf color( TO:0000326 )
chlorophyll content( TO:0000495 )
hydrogen peroxide content( TO:0000605 )
cold tolerance( TO:0000303 )
salt tolerance( TO:0006001 )
abscisic acid sensitivity( TO:0000615 )
cytokinin sensitivity( TO:0000167 )
auxin sensitivity( TO:0000163 )
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Plant Ontology
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leaf( PO:0025034 )
root( PO:0009005 )
shoot system( PO:0009006 )
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Related Strains
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Phenotype images
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Last updated
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Dec 11, 2024
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Update info.