Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol SE13
Gene Symbol Synonym Se13, OsHY2, OsGUN3, GUN3, PS13
Gene Name Synonym Genome uncoupled 3, Photoperiod-sensitivity-13
Protein Name
Allele se13
Chromosome No. 1
Explanation phytochromobilin synthase. Under LD, Se13 is involved in a genetic photoperiodic flowering pathway that includes Hd1 and Ghd7.
Trait Class Reproductive organ - Heading date
Character as QTL - Yield and productivity
cDNA Accession No. AK101395
MSU ID LOC_Os01g72090.1
RAP ID Os01g0949400
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
Link map Classical linkage map
Cui Y., Zhu M., Xu Z., Xu Q.
Theor. Appl. Genet. 2019  132(6)  1887-1896
Assessment of the effect of ten heading time genes on reproductive transition and yield components in rice using a CRISPR/Cas9 system.
Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018  9  782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
Li R.Q., Jiang M., Liu Y.H., Zheng Y.C., Huang J.Z., Wu J.M., Shu Q.Y.
Front Plant Sci 2017  8  901
The xantha Marker Trait Is Associated with Altered Tetrapyrrole Biosynthesis and Deregulated Transcription of PhANGs in Rice.
Yoshitake Y., Yokoo T., Saito H., Tsukiyama T., Quan X., Zikihara K., Katsura H., Tokutomi S., Aboshi T., Mori N., Inoue H., Nishida H., Kohchi T., Teraishi M., Okumoto Y., Tanisaka T.
Sci Rep 2015  5  7709
The effects of phytochrome-mediated light signals on the developmental acquisition of photoperiod sensitivity in rice.
Xu Q., Saito H., Hirose I., Katsura K., Yoshitake Y., Yokoo T., Tsukiyama T., Teraishi M., Tanisaka T., Okumoto Y.
Molecular Breeding 2014  33  813-819
The effects of the photoperiod-insensitive alleles, se13, hd1 and ghd7, on yield components in rice
Saito H,Okumoto Y,Yoshitake Y,Inoue H,Yuan Q,Teraishi M,Tsukiyama T,Nishida H,Tanisaka T
Theor. Appl. Genet. 2010  122(1)  109-18
Complete loss of photoperiodic response in the rice mutant line X61 is caused by deficiency of phytochrome chromophore biosynthesis gene.
TextPresso Search Search textpresso for SE13 ( Recent references may be retrievable, but without any warranty )
DB Reference
Gramene ID -
Gene Ontology chloroplast-nucleus signaling pathway( GO:0010019 )
phytochromobilin biosynthetic process( GO:0010024 )
phytochrome chromophore biosynthetic process( GO:0048543 )
photoperiodism, flowering( GO:0048573 )
phytochromobilin:ferredoxin oxidoreductase activity( GO:0050619 )
cobalt ion binding( GO:0050897 )
Trait Ontology days to heading( TO:0000137 )
flowering time( TO:0002616 )
panicle number( TO:0000152 )
yield trait( TO:0000371 )
Plant Ontology -
Related Strains
Phenotype images
Last updated
Jan 28, 2020