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Basic Information
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CGSNL Gene Symbol
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XA39
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Gene Symbol Synonym
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Xa39, OsXa39, OsRGA5-L2, RGA5-L2, OsRGA5L2, RGA5L2
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CGSNL Gene Name
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XANTHOMONAS ORYZAE PV. ORYZAE RESISTANCE 39
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Gene Name Synonym
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Xanthomonas oryzae pv. oryzae resistance 39, OsRGA5-like 2
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Protein Name
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Allele
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Chromosome No.
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11
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Explanation
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LOC_Os11g37759(Os11g0588600) is a Xa39 candidate gene. The study in Zhang et al.(2015) provides the comprehensive transcriptome profile of a rice introgression line carrying Xa39 and its parents, and identifies a set of DEGs involved in BSHR mediated by Xa39. OsRGA5-L2 in Wen et al. 2023. GO:0035872: nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway. GO:0098542: defense response to other organism.
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Trait Class
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Tolerance and resistance
Tolerance and resistance - Disease resistance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK066312
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MSU ID
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LOC_Os11g37759.1
LOC_Os11g37759.2
LOC_Os11g37759.3
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RAP ID
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Os11g0588600
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Tun W., Vo K.T.X., Derakhshani B., Yoon J., Cho L.H., Win KTYS., Lee S.W., Jung K.H., Jeon J.S., An G.
Front Plant Sci 2024 15 1519039
OsWRKY26 negatively regulates bacterial blight resistance by suppressing <i>OsXa39</i> expression.
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Wen P., He J., Zhang Q., Qi H., Zhang A., Liu D., Sun Q., Wang Y., Li Q., Wang W., Chen Z., Wang Y., Liu Y., Wan J.
Int J Mol Sci 2023 24(16)
SET domain group 703 Regulates Planthopper Resistance by Suppressing the Expression of Defense-Related Genes.
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Shim J.S., Oh N., Chung P.J., Kim Y.S., Choi Y.D., Kim J.K.
Front Plant Sci 2018 9 310
Overexpression of <i>OsNAC14</i> Improves drought tolerance in Rice.
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Zhang F., Li-Yu Huang, Zhang F., Ali J., Cruz C., Da-Long Zhuo, Zheng-Lin Du, Zhi-Kang Li, Yong-Li Zhou
BMC Genomics 2015 16(1) 111
Comparative transcriptome profiling of a rice line carrying Xa39 and its parents triggered by Xanthomonas oryzae pv. oryzae provides novel insights into the broad-spectrum hypersensitive response.
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Zhang F., D.-L.. Zhuo, F. .Zhang, L.-Y. Huang, W.-S. Wang, J.-L. Xu, C.Vera Cruz, Z.-K. Li, Y.-L. Zhou.
Plant Pathol. 2014
Xa39, a novel dominant gene conferring broad-spectrum resistance to Xanthomonas oryzae pv. oryzae in rice
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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defense response( GO:0006952 )
innate immune response-activating signal transduction( GO:0002758 )
defense response to bacterium( GO:0042742 )
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Trait Ontology
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biotic stress trait( TO:0000179 )
bacterial blight disease resistance( TO:0000175 )
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Plant Ontology
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-
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Related Strains
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Phenotype images
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Last updated
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Jun 12, 2025
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Update info.