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Basic Information
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CGSNL Gene Symbol
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CTB4A
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Gene Symbol Synonym
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OsRLCK127, RLCK127, OsCTB4a, qCTB4-1
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CGSNL Gene Name
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COLD TOLERANCE AT BOOTING STAGE 4A
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Gene Name Synonym
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Receptor-like Cytoplasmic Kinase 127, cold tolerance at booting stage 4a
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Protein Name
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RECEPTOR-LIKE CYTOPLASMIC KINASE 127
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Allele
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ctb4a
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Chromosome No.
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4
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Explanation
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FJ693708.1. a conserved leucine-rich repeat receptor-like kinase. candidate gene for qSSR4.
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Trait Class
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Tolerance and resistance - Stress tolerance
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Expression
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Sequence/Locus
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cDNA Accession No.
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AK121779
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MSU ID
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LOC_Os04g04330.1
LOC_Os04g04330.2
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RAP ID
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Os04g0132500
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Links
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Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
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INSD Accession List
(Test version)
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-
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Map
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Locate(cM)
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Link map
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Classical linkage map
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References
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Li J., Zeng Y., Pan Y., Zhou L., Zhang Z., Guo H., Lou Q., Shui G., Huang H., Tian H., Guo Y., Yuan P., Yang H., Pan G., Wang R., Zhang H., Yang S., Guo Y., Ge S., Li J., Li Z.
New Phytol. 2021 231(3) 1056-1072
Stepwise selection of natural variations at CTB2 and CTB4a improves cold adaptation during domestication of japonica rice.
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Guo H., Zeng Y., Li J., Ma X., Zhang Z., Lou Q., Li J., Gu Y., Zhang H., Li J., Li Z.
Plant Biotechnol. J. 2020
Differentiation, evolution and utilization of natural alleles for cold adaptability at the reproductive stage in rice.
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Xiao N., Gao Y., Qian H., Gao Q., Wu Y., Zhang D., Zhang X., Yu L., Li Y., Pan C., Liu G., Zhou C., Jiang M., Huang N., Dai Z., Liang C., Chen Z., Chen J., Li A.
Plant Physiol. 2018 177(3) 1108-1123
Identification of Genes Related to cold tolerance and a Functional Allele That Confers cold tolerance.
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Zhang Z., Li J., Pan Y., Li J., Zhou L., Shi H., Zeng Y., Guo H., Yang S., Zheng W., Yu J., Sun X., Li G., Ding Y., Ma L., Shen S., Dai L., Zhang H., Yang S., Guo Y., Li Z.
Nat Commun 2017 8 14788
Natural variation in CTB4a enhances rice adaptation to cold habitats.
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Vij S., Giri J., Prasant Kumar Dansana, Kapoor S., Akhilesh K Tyagi
Mol Plant 2008 1(5) 732-50
The receptor-like cytoplasmic kinase (OsRLCK) gene family in rice: organization, phylogenetic relationship, and expression during development and stress.
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DB Reference
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Gramene ID
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-
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Ontologies
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Gene Ontology
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protein serine/threonine kinase activity( GO:0004674 )
ATP binding( GO:0005524 )
response to cold( GO:0009409 )
cell surface( GO:0009986 )
chloroplast( GO:0009507 )
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Trait Ontology
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cold tolerance( TO:0000303 )
spikelet fertility( TO:0000180 )
yield trait( TO:0000371 )
pollen fertility( TO:0000421 )
germinability at low temperature( TO:0000483 )
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Plant Ontology
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sporophyte vegetative stage( PO:0007134 )
booting stage( PO:0007014 )
tapetum( PO:0025313 )
leaf sheath( PO:0020104 )
anther vascular system( PO:0008013 )
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Related Strains
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-
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Phenotype images
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Last updated
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Mar 1, 2023
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Update info.