Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | SHR2 |
| Gene Symbol Synonym | OsSHR2, OsGRAS-15, OsGRAS15, GRAS-15, GRAS15 |
| CGSNL Gene Name | SHORT ROOT GENE 2 |
| Gene Name Synonym | rice SHORT ROOT gene2, SHORT-ROOT 2, SHORTROOT2, SHORT-ROOT protein 2, GRAS protein 15 |
| Protein Name | PROTEIN SHORT-ROOT 2 |
| Allele | c-osshr2-1, c-osshr2-2, Osshr2-1, Osshr2-2, Osshr2-3, Osshr2-4 |
| Chromosome No. | 3 |
| Explanation | Q75I13. A2XIA8. one of the two rice orthologs of the Arabidopsis SHR gene. ZmSHR1 sequence (GRMZM2G132794) is orthologous to OsSHR2 (Schuler et al. 2018). TO:0000820: leaf vein morphology trait. GO:2000038: regulation of stomatal complex development. |
| Trait Class |
Vegetative organ - Leaf
Vegetative organ - Culm Vegetative organ - Root Tolerance and resistance - Disease resistance Tolerance and resistance - Stress tolerance |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
A2XIA8
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| MSU ID |
LOC_Os03g31880.1
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| RAP ID |
Os03g0433200 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
- |
| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Liu Q., Teng S., Deng C., Wu S., Li H., Wang Y., Wu J., Cui X., Zhang Z., Quick W.P., Brutnell T.P., Sun X., Lu T.
Plant Cell 2023 SHORT ROOT and INDETERMINATE DOMAIN family members govern PIN-FORMED expression to regulate minor vein differentiation in rice.
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Dutta M., Saha A., Moin M., Kirti P.B.
Front Plant Sci 2021 12 777285 Genome-Wide Identification, Transcript Profiling and Bioinformatic Analyses of GRAS transcription factor Genes in Rice.
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Wu Z., Chen L., Yu Q., Zhou W., Gou X., Li J., Hou S.
New Phytol. 2019 223(1) 220-232 Multiple transcriptional factors control stomata development in rice.
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Schuler M.L., Sedelnikova O.V., Walker B.J., Westhoff P., Langdale J.A.
Plant Physiol. 2018 176(1) 757-772 SHORTROOT-Mediated Increase in Stomatal Density Has No Impact on Photosynthetic Efficiency.
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Henry S., Dievart A., Divol F., Pauluzzi G., Meynard D., Swarup R., Wu S., Gallagher K.L., Perin C.
Dev. Biol. 2017 425(1) 1-7 SHR overexpression induces the formation of supernumerary cell layers with cortex cell identity in rice.
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Wu S., Lee C.M., Hayashi T., Price S., Divol F., Henry S., Pauluzzi G., Perin C., Gallagher K.L.
Proc. Natl. Acad. Sci. U.S.A. 2014 A plausible mechanism, based upon SHORT-ROOT movement, for regulating the number of cortex cell layers in roots.
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Cui H,Levesque MP,Vernoux T,Jung JW,Paquette AJ,Gallagher KL,Wang JY,Blilou I,Scheres B,Benfey PN
Science 2007 316 421-5 An evolutionarily conserved mechanism delimiting SHR movement defines a single layer of endodermis in plants.
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Tian C, Wan P, Sun S, Li J, Chen M.
Plant Mol. Biol. 2004 54 519-532 Genome-wide analysis of the GRAS gene family in rice and Arabidopsis.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
nucleus( GO:0005634 )
root development( GO:0048364 ) transcription, DNA-dependent( GO:0006351 ) regulation of transcription, DNA-dependent( GO:0006355 ) multicellular organismal development( GO:0007275 ) regulation of cell division( GO:0051302 ) stomatal complex development( GO:0010374 ) defense response to bacterium( GO:0042742 ) response to salt stress( GO:0009651 ) response to abscisic acid stimulus( GO:0009737 ) defense response to fungus( GO:0050832 ) epidermal cell fate specification( GO:0009957 ) leaf development( GO:0048366 ) |
| Trait Ontology |
root development trait( TO:0000656 )
root length( TO:0000227 ) root anatomy and morphology trait( TO:0000043 ) root thickness( TO:0000306 ) plastochron( TO:0000735 ) stomatal frequency( TO:0000566 ) sheath blight disease resistance( TO:0000255 ) abscisic acid sensitivity( TO:0000615 ) salt tolerance( TO:0006001 ) bacterial blight disease resistance( TO:0000175 ) vascular tissue related trait( TO:0000470 ) seed set percent( TO:0000455 ) plant height( TO:0000207 ) leaf curling( TO:0002681 ) tiller angle( TO:0000567 ) leaf development trait( TO:0000655 ) |
| Plant Ontology |
root cortex( PO:0000258 )
root development stage( PO:0007520 ) leaf lamina vein( PO:0020138 ) vascular system( PO:0000034 ) root primordium( PO:0005029 ) root( PO:0009005 ) leaf( PO:0025034 ) root tip( PO:0000025 ) root initial cell( PO:0000059 ) leaf development stage( PO:0001050 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Feb 19, 2025 | |
