Gene - Detail

Detail of Gene

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Basic Information
CGSNL Gene Symbol _
Gene Symbol Synonym OsCCD1, CCD1
CGSNL Gene Name _
Gene Name Synonym carotenoid cleavage dioxygenase 1
Protein Name
Allele
Chromosome No. 12
Explanation LOC_Os12g44310.
Trait Class Biochemical character
Coloration - Others
Expression
Sequence/Locus
cDNA Accession No. AK066766
MSU ID LOC_Os12g44310.1
LOC_Os12g44310.2
RAP ID Os12g0640600
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version)
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Map
Locate(cM)
Link map Classical linkage map
References
Ko M.R., Song M.H., Kim J.K., Baek S.A., You M.K., Lim S.H., Ha S.H.
J. Exp. Bot. 2018  69(21)  5105-5116
RNAi-mediated suppression of three carotenoid-cleavage dioxygenase genes, OsCCD1, 4a, and 4b, increases carotenoid content in rice.
Priya R., Siva R.
Gene 2014  548  223-233
Phylogenetic analysis and evolutionary studies of plant carotenoid cleavage dioxygenase gene
Ilg A., Beyer P., Salim Al-Babili
FEBS J. 2009  276(3)  736-47
Characterization of the rice carotenoid cleavage dioxygenase 1 reveals a novel route for geranial biosynthesis.
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DB Reference
Gramene ID -
Ontologies
Gene Ontology 9-cis-epoxycarotenoid dioxygenase activity( GO:0045549 )
metal ion binding( GO:0046872 )
carotene catabolic process( GO:0016121 )
carotenoid biosynthetic process( GO:0016117 )
chlorophyll biosynthetic process( GO:0015995 )
isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway( GO:0019288 )
pentose-phosphate shunt( GO:0006098 )
apocarotenoid biosynthetic process( GO:0043289 )
vacuolar membrane( GO:0005774 )
plasma membrane( GO:0005886 )
plasmodesma( GO:0009506 )
Golgi apparatus( GO:0005794 )
xanthophyll catabolic process( GO:0016124 )
unsaturated fatty acid biosynthetic process( GO:0006636 )
response to stress( GO:0006950 )
PSII associated light-harvesting complex II catabolic process( GO:0010304 )
phosphatidylglycerol biosynthetic process( GO:0006655 )
Trait Ontology carotenoid content( TO:0000496 )
Plant Ontology leaf( PO:0025034 )
Related Strains
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Phenotype images
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Last updated
Apr 22, 2019


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