Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | _ |
| Gene Symbol Synonym | atp1, atp1-1, ATP1 |
| CGSNL Gene Name | _ |
| Gene Name Synonym | ATP synthase F0 subunit 1, ATP synthase subunit 1, ATP synthase alpha subunit |
| Protein Name | |
| Allele | |
| Chromosome No. | Mt |
| Explanation | LOC_Osm1g00580. P0C521, P0C522. AP011077 (Indica Group mitochondrial DNA, complete genome). BA000029: BAC19899 (Nipponbare complete mitochondrial genome). JN861111: AER12983, JN861112 (indica Hassawi and IR1112 x Hassawi complete mitochondrial genome). JF281153: AEZ03711 (indica IR6888 complete mitochondrial genome). atp1-1 in JN861111 and JN861112. an F1 sector component of complex V. |
| Trait Class |
Biochemical character
Reproductive organ - Pollination, fertilization, fertility - Male sterility |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. | - |
| MSU ID |
LOC_Osm1g00580
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| RAP ID | - |
| Links | Organelle Genome |
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INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| References | |
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Bentolila,S. and Stefanov,S.
Plant Physiol. 2012 158(2) 996-1017 A reevaluation of rice mitochondrial evolution based on the complete sequence of male-fertile and male-sterile mitochondrial genomes
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Zhang,T., Hu,S., Zhang,G., Pan,L., Zhang,X., Al-Mssallem,I.S. and Yu,J.
PLoS ONE 2012 7 (7) E42041 The Organelle Genomes of Hassawi Rice (Oryza sativa L.) and Its Hybrid in Saudi Arabia: Genome Variation, Rearrangement, and Origins
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Liu G., Tian H., Huang Y.Q., Hu J., Ji Y.X., Li S.Q., Feng Y.Q., Guo L., Zhu Y.G.
J. Biol. Chem. 2012 287(47) 40051-60 Alterations of mitochondrial protein assembly and jasmonic acid biosynthesis pathway in Honglian (HL)-type cytoplasmic male sterility rice.
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Fujii S., Kazama T., Yamada M., Toriyama K.
BMC Genomics 2010 11 209 Discovery of global genomic re-organization based on comparison of two newly sequenced rice mitochondrial genomes with cytoplasmic male sterility-related genes
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Notsu,Y., Masood,S., Nishikawa,T., Kubo,N., Akiduki,G., Nakazono,M., Hirai,A. and Kadowaki,K.
Molecular Genetics & Genomics (Molecular General Genetics up to 2001) 2002 268(4) 434-445 The complete sequence of the rice (Oryza sativa L.) mitochondrial genome: frequent DNA sequence acquisition and loss during the evolution of flowering plants
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
ATP binding( GO:0005524 )
cobalt ion binding( GO:0050897 ) copper ion binding( GO:0005507 ) cell wall( GO:0005618 ) nucleolus( GO:0005730 ) mitochondrion( GO:0005739 ) mitochondrial inner membrane( GO:0005743 ) vacuole( GO:0005773 ) plasma membrane( GO:0005886 ) response to oxidative stress( GO:0006979 ) poly(U) RNA binding( GO:0008266 ) zinc ion binding( GO:0008270 ) RNA modification( GO:0009451 ) chloroplast envelope( GO:0009941 ) ATP synthesis coupled proton transport( GO:0015986 ) ATP hydrolysis coupled proton transport( GO:0015991 ) proton-transporting ATP synthase complex, catalytic core F(1)( GO:0045261 ) hydrogen ion transporting ATP synthase activity, rotational mechanism( GO:0046933 ) proton-transporting ATPase activity, rotational mechanism( GO:0046961 ) |
| Trait Ontology | - |
| Plant Ontology | - |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| Jan 21, 2016 | |
