|
Basic Information
|
|
CGSNL Gene Symbol
|
YGL10
|
|
Gene Symbol Synonym
|
CAO, OsCAO, CAO1, OsCAO1, Oslls1, Lls1, DVR, PGL
|
|
CGSNL Gene Name
|
YELLOW-GREEN LEAF 10
|
|
Gene Name Synonym
|
chlorophyll a oxygenase, Chlorophyll a oxygenase 1, chlorophyllide a oxygenate 1, Lls1-homologue of maize, "3,8-divinyl chlorophyllide a 8-vinyl reductase", pale green leaf, yellow green leaf 10
|
|
Protein Name
|
|
|
Allele
|
pgl, ygl10, cao1, cao1-1, cao1-2, cao1-3, cao1-1-2, cao1-2-16
|
|
Chromosome No.
|
10
|
|
Explanation
|
AB021310. Q8S7E1. AF284781. D46313. GO:0072593: reactive oxygen species metabolic process. GO:1900055: regulation of leaf senescence. GO:2000377: regulation of reactive oxygen species metabolic process.
|
|
Trait Class
|
Tolerance and resistance - Lesion mimic
Character as QTL - Plant growth activity
Character as QTL - Yield and productivity
Seed - Morphological traits - Grain shape
Vegetative organ - Culm
Character as QTL - Grain quality
Seed - Physiological traits
Coloration - Chlorophyll
Tolerance and resistance - Disease resistance
Vegetative organ - Leaf
Biochemical character
Tolerance and resistance - Stress tolerance
|
|
Expression
|
|
|
Sequence/Locus
|
|
cDNA Accession No.
|
AK071899
|
|
MSU ID
|
LOC_Os10g41780.1
LOC_Os10g41780.2
LOC_Os10g41780.3
LOC_Os10g41780.4
|
|
RAP ID
|
Os10g0567400
|
|
Links
|
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB
(
IRGSP 1.0
/
Build5
)
Related IDs List (
IRGSP 1.0
/
Build5
)
|
INSD Accession List
(Test version)
|
-
|
|
Map
|
|
Locate(cM)
|
|
|
Link map
|
Classical linkage map
|
|
References
|
|
Xiong J., Wen G., Song J., Liu X., Chen Q., Zhang G., Xiao Y., Liu X., Deng H., Tang W., Wang F., Lu X.
Genes (Basel) 2024 15(6)
Knockout of the Chlorophyll a Oxygenase Gene <i>OsCAO1</i> Reduces Chilling Tolerance in Rice Seedlings.
|
|
Chen H., Wang Q., Fan M., Zhang X., Feng P., Zhu L., Wu J., Cheng X., Wang J.
Int J Mol Sci 2023 24(6)
A Single Nucleotide Variation of <i>CRS2</i> Affected the Establishment of Photosynthetic System in Rice.
|
|
Rahman M.A., Ullah H.
Plants (Basel) 2023 12(12)
Receptor for Activated C Kinase1B (RACK1B) Delays Salinity-Induced Senescence in Rice Leaves by Regulating Chlorophyll Degradation.
|
|
Qiu Z., Chen D., Teng L., Guan P., Yu G., Zhang P., Song J., Zeng Q., Zhu L.
Rice (N Y) 2022 15(1) 50
OsWHY1 Interacts with OsTRX z and is Essential for Early Chloroplast Development in Rice.
|
|
Li J., Zhao T., Chen L., Chen H., Luo D., Chen C., Miao Y., Liu D.
BMC Plant Biol. 2022 22(1) 368
Artemisia argyi allelopathy: a generalist compromises hormone balance, element absorption, and photosynthesis of receptor plants.
|
|
Xu J., Ji Z., Wang C., Xu F., Wang F., Zheng Y., Tang Y., Wei Z., Zhao T., Zhao K.
Front Plant Sci 2022 13 918673
<i>WATER-SOAKED SPOT1</i> Controls Chloroplast Development and leaf senescence <i>via</i> Regulating Reactive Oxygen Species Homeostasis in Rice.
|
|
Liu X., Deng X.J., Li C.Y., Xiao Y.K., Zhao K., Guo J., Yang X.R., Zhang H.S., Chen C.P., Luo Y.T., Tang Y.L., Yang B., Sun C.H., Wang P.R.
Int J Mol Sci 2022 23(10)
Mutation of Protoporphyrinogen IX Oxidase Gene Causes Spotted and rolled leaf and Its Overexpression Generates Herbicide Resistance in Rice.
|
|
Lu X., Min W., Shi Y., Tian L., Li P., Ma T., Zhang Y., Luo C.
Front Plant Sci 2022 13 849553
Exogenous Melatonin Alleviates Alkaline Stress by Removing Reactive Oxygen Species and Promoting Antioxidant Defence in Rice Seedlings.
|
|
Lin X., Huang Y., Rao Y., Ouyang L., Zhou D., Zhu C., Fu J., Chen C., Yin J., Bian J., He H., Zou G., Xu J.
BMC Plant Biol. 2022 22(1) 612
A base substitution in OsphyC disturbs its Interaction with OsphyB and affects flowering time and chlorophyll synthesis in rice.
|
|
Xu T., Zhang J., Liu Y., Zhang Q., Li W., Zhang Y., Wu M., Chen T., Ding D., Wang W., Zhang Z.
Front Plant Sci 2022 13 986678
Exon skipping in <i>IspE</i> Gene is associated with abnormal chloroplast development in rice <i>albino leaf 4</i> mutant.
|
|
Cao W., Zhang H., Zhou Y., Zhao J., Lu S., Wang X., Chen X., Yuan L., Guan H., Wang G., Shen W., De Vleesschauwer D., Li Z., Shi X., Gu J., Guo M., Feng Z., Chen Z., Zhang Y., Pan X., Liu W., Liang G., Yan C., Hu K., Liu Q., Zuo S.
Plant Biotechnol. J. 2022 20(2) 335-349
Suppressing chlorophyll degradation by silencing OsNYC3 improves rice resistance to Rhizoctonia solani, the causal agent of sheath blight.
|
|
Jin X., Baysal C., Drapal M., Sheng Y., Huang X., He W., Shi L., Capell T., Fraser P.D., Christou P., Zhu C.
Plants (Basel) 2021 10(7)
The Coordinated Upregulated Expression of Genes Involved in MEP, Chlorophyll, Carotenoid and Tocopherol Pathways, Mirrored the Corresponding Metabolite Contents in Rice Leaves during De-Etiolation.
|
|
Wang Q., Zhu B., Chen C., Yuan Z., Guo J., Yang X., Wang S., Lv Y., Liu Q., Yang B., Sun C., Wang P., Deng X.
Rice (N Y) 2021 14(1) 50
A Single Nucleotide Substitution of GSAM Gene Causes Massive Accumulation of Glutamate 1-Semialdehyde and Yellow Leaf Phenotype in Rice.
|
|
R A O Yuchun, J I A O Ran, W A N G Sheng, W U Xianmei, Y E Hanfei, P A N Chenyang, L I Sanfeng, Dedong X., Z H O U Weiyong, D A I Gaoxing, H U Juan, R E N Deyong, W A N G Yuexing
Rice (N Y) 2021 14(1) 34
SPL36 Encodes a Receptor-like Protein Kinase that Regulates Programmed Cell Death and Defense Responses in Rice.
|
|
Zhang Z., He Y., Li L., Zhang X., Xu X., Shi Y., Wu J.L.
Plant Signal Behav 2021 16(3) 1864606
Characterization of a novel allele encoding pheophorbide a oxygenase in rice.
|
|
Huang W., Zhang Y., Shen L., Fang Q., Liu Q., Gong C., Zhang C., Zhou Y., Mao C., Zhu Y., Zhang J., Chen H., Zhang Y., Lin Y., Bock R., Zhou F.
New Phytol. 2020
Accumulation of the RNA polymerase subunit RpoB depends on RNA editing by OsPPR16 and affects chloroplast development during early leaf development in rice.
|
|
Wang H., Shi Y., Zhang X., Xu X., Wu J.L.
Int J Mol Sci 2020 21(4)
Characterization of a Novel Rice Dynamic Narrow-rolled leaf Mutant with Deficiencies in Aromatic Amino Acids.
|
|
Jung Y.J., Lee H.J., Yu J., Bae S., Cho Y.G., Kang K.K.
Plant Cell Rep. 2020
Transcriptomic and physiological analysis of OsCAO1 knockout lines using the CRISPR/Cas9 system in rice.
|
|
Fang G., Yang S., Ruan B., Liu C., Zhang A., Jiang H., Ding S., Tian B., Zhang Y., Jahan N., Zhu L., Zhang G., Dong G., Zhang Q., Zeng D., Guo L., Gao Z., Qian Q.
Rice (N Y) 2020 13(1) 49
Isolation of TSCD11 Gene for Early Chloroplast Development under High Temperature in Rice.
|
|
Lin D., Kong R., Chen L., Wang Y., Wu L., Xu J., Piao Z., Lee G., Dong Y.
Sci Rep 2020 10(1) 8518
Chloroplast development at low temperature requires the pseudouridine synthase gene TCD3 in rice.
|
|
Das P., Lakra N., Nutan K.K., Singla-Pareek SL., Pareek A.
Rice (N Y) 2019 12(1) 58
A unique bZIP transcription factor imparting multiple stress tolerance in Rice.
|
|
Lin D., Zhang L., Mei J., Chen J., Piao Z., Lee G., Dong Y.
Plant Biol (Stuttg) 2019 21(4) 585-594
Mutation of the rice TCM12 gene encoding 2,3-bisphosphoglycerate-independent phosphoglycerate mutase affects chlorophyll synthesis, photosynthesis and chloroplast development at seedling stage at low temperatures.
|
|
He Y., Li L., Zhang Z., Wu J.L.
Int J Mol Sci 2018 19(1)
Identification and Comparative Analysis of Premature Senescence Leaf Mutants in Rice (Oryza sativa L.).
|
|
Qiu Z., Chen D., He L., Zhang S., Yang Z., Zhang Y., Wang Z., Ren D., Qian Q., Guo L., Zhu L.
Rice (N Y) 2018 11(1) 39
The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9.
|
|
Lin D., Zheng K., Liu Z., Li Z., Teng S., Xu J., Dong Y.
Plant Genome 2018 11(1)
Rice <i>TCM1</i> Encoding a Component of the TAC Complex is Required for Chloroplast Development under Cold Stress.
|
|
Liu Z., Wang Z., Gu H., You J., Hu M., Zhang Y., Zhu Z., Wang Y., Liu S., Chen L., Liu X., Tian Y., Zhou S., Jiang L., Liu L., Wan J.
Front Plant Sci 2018 9 782
Identification and Phenotypic Characterization of <i>ZEBRA LEAF16</i> Encoding a beta-hydroxyacyl-ACP dehydratase in Rice.
|
|
Lin D., Jiang Q., Ma X., Zheng K., Gong X., Teng S., Xu J., Dong Y.
G3 (Bethesda) 2018 8(1) 253-263
Rice <i>TSV3</i> Encoding Obg-Like GTPase Protein Is Essential for Chloroplast Development During the Early Leaf Stage Under Cold Stress.
|
|
Ahmed M.M.S., Ji W., Wang M., Bian S., Xu M., Wang W., Zhang J., Xu Z., Yu M., Liu Q., Zhang C., Zhang H., Tang S., Gu M., Yu H.
Gene 2017
Transcriptional changes of rice in response to rice black-streaked dwarf virus.
|
|
Lu G., Casaretto J.A., Ying S., Mahmood K., Liu F., Bi Y.M., Rothstein S.J.
Plant Mol. Biol. 2017
Overexpression of OsGATA12 regulates chlorophyll content, delays plant senescence and improves rice yield under high density planting.
|
|
Ge C., Wang L., Ye W., Wu L., Cui Y., Chen P., Pan J., Zhang D., Hu J., Zeng D., Dong G., Qian Q., Guo L., Xue D.
Sci Rep 2017 7(1) 3298
Single-point Mutation of an Histidine-aspartic Domain-containing Gene involving in Chloroplast Ribosome Biogenesis Leads to White Fine Stripe Leaf in Rice.
|
|
Sheng Z., Lv Y., Li W., Luo R., Wei X., Xie L., Jiao G., Shao G., Wang J., Tang S., Hu P.
PLoS ONE 2017 12(5) e0177989
Yellow-Leaf 1 encodes a magnesium-protoporphyrin IX monomethyl ester cyclase, involved in chlorophyll biosynthesis in rice (Oryza sativa L.).
|
|
Kwon C.T., Kim S.H., Song G., Kim D., Paek N.C.
Rice (N Y) 2017 10(1) 1
Two NADPH: Protochlorophyllide Oxidoreductase (POR) Isoforms Play Distinct Roles in Environmental Adaptation in Rice.
|
|
Zhang Z., Tan J., Shi Z., Xie Q., Xing Y., Liu C., Chen Q., Zhu H., Wang J., Zhang J., Zhang G.
Plant Physiol. 2016
albino leaf 1 that Encodes the sole Octotricopeptide Repeat Protein Is Responsible for Chloroplast Development in Rice.
|
|
Li Y.Y., Shen A., Xiong W., Sun Q.L., Luo Q., Song T., Li Z.L., Luan W.J.
Rice (N Y) 2016 9(1) 46
Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
|
|
Yang Y., Xu J., Huang L., Leng Y., Dai L., Rao Y., Chen L., Wang Y., Tu Z., Hu J., Ren D., Zhang G., Zhu L., Guo L., Qian Q., Zeng D.
J. Exp. Bot. 2015
PGL, encoding chlorophyllide a oxygenase 1, impacts leaf senescence and indirectly affects grain yield and quality in rice.
|
|
Inagaki N., Kinoshita K., Kagawa T., Tanaka A., Ueno O., Shimada H., Takano M.
PLoS ONE 2015 10(8) e0135408
Phytochrome B Mediates the Regulation of Chlorophyll Biosynthesis through Transcriptional Regulation of ChlH and GUN4 in Rice Seedlings.
|
|
Wang Y.a, Jiang X.a, Li K.a, Wu M.a b, Zhang R.a, Zhang L.a, Chen G.a
Biometals 2014 27 389-401
Photosynthetic responses of Oryza sativa L. seedlings to cadmium stress: Physiological, biochemical and ultrastructural analyses
|
|
YANG Hai-lian, LIU Min, GUO Min, LI Rong-de, ZHANG Hong-gen, YAN Chang-jie
hin J Rice Sci 2014 28(1) 41-48
Genetic Analysis and Position Cloning of a yellow Ggren leaf 10 (ygl10) Gene, Responsible for Leaf Color in Rice
|
|
Chen H., Cheng Z., Ma X., Wu H., Liu Y., Zhou K., Chen Y., Ma W., Bi J., Zhang X., Guo X., Wang J., Lei C., Wu F., Lin Q., Liu Y., Liu L., Jiang L.
Plant Cell Rep. 2013 32(12) 1855-67
A knockdown mutation of YELLOW-GREEN LEAF2 blocks chlorophyll biosynthesis in rice.
|
|
Lee S, Kim JH, Yoo ES, Lee CH, Hirochika H, An G.
Plant Mol. Biol. 2005 57(6) 805-818
Differential regulation of chlorophyll a oxygenase genes in rice.
|
|
Jwa,N.-S., Park,S.-G., Park,C.-H., Kim,S.-O., Ahn,I.-P., Park,S.-Y., Yoon,C.-H. and Lee,Y.-H.
Plant Pathol. J. 2000 16(3) 151-155
Cloning and expression of a rice cDNA encoding a Lls1 homolog of maize
|
|
Tomitani,A., Okada,K., Miyashita,H., Matthijs,H.C., Ohno,T. and Tanaka,A.
Nature 1999 400(6740) 159-162
Chlorophyll b and phycobilins in the common ancestor of cyanobacteria and chloroplasts.
|
|
DB Reference
|
|
Gramene ID
|
-
|
|
Ontologies
|
|
Gene Ontology
|
response to cadmium ion( GO:0046686 )
defense response to virus( GO:0051607 )
response to hydrogen peroxide( GO:0042542 )
2 iron, 2 sulfur cluster binding( GO:0051537 )
leaf senescence( GO:0010150 )
chlorophyllide a oxygenase activity( GO:0010277 )
chlorophyll biosynthetic process( GO:0015995 )
chlorophyll catabolic process( GO:0015996 )
chloroplast membrane( GO:0031969 )
regulation of photosynthesis( GO:0010109 )
leaf development( GO:0048366 )
chloroplast organization( GO:0009658 )
response to light stimulus( GO:0009416 )
defense response to fungus( GO:0050832 )
response to low light intensity stimulus( GO:0009645 )
response to hormone stimulus( GO:0009725 )
response to other organism( GO:0051707 )
iron ion binding( GO:0005506 )
defense response( GO:0006952 )
response to heat( GO:0009408 )
chloroplast thylakoid membrane( GO:0009535 )
thylakoid membrane organization( GO:0010027 )
oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen( GO:0016705 )
negative regulation of cell death( GO:0060548 )
response to cold( GO:0009409 )
chlorophyll metabolic process( GO:0015994 )
|
|
Trait Ontology
|
1000-seed weight( TO:0000382 )
grain yield per plant( TO:0000449 )
leaf rolling tolerance( TO:0002662 )
hydrogen peroxide content( TO:0000605 )
cold tolerance( TO:0000303 )
carotenoid content( TO:0000496 )
gel consistency( TO:0000211 )
chalky endosperm( TO:0000266 )
leaf development trait( TO:0000655 )
seed quality( TO:0000162 )
chlorophyll-a content( TO:0000293 )
chlorophyll ratio( TO:0000298 )
chloroplast development trait( TO:0002715 )
plant height( TO:0000207 )
tiller number( TO:0000346 )
grain number( TO:0002759 )
grain size( TO:0000397 )
grain weight( TO:0000590 )
seed set percent( TO:0000455 )
plant growth hormone sensitivity( TO:0000401 )
light intensity sensitivity( TO:0000460 )
sheath blight disease resistance( TO:0000255 )
light sensitivity( TO:0000075 )
total biomass yield( TO:0000457 )
grain yield( TO:0000396 )
photosynthetic ability( TO:0000316 )
amylose content( TO:0000196 )
chlorophyll-b content( TO:0000295 )
flag leaf lamina width( TO:0002758 )
flag leaf length( TO:0002757 )
black streak dwarf virus resistance( TO:0000020 )
viral disease resistance( TO:0000148 )
net photosynthetic rate( TO:0001027 )
heat tolerance( TO:0000259 )
chlorophyll content( TO:0000495 )
leaf color( TO:0000326 )
leaf senescence( TO:0000249 )
mimic response( TO:0000063 )
|
|
Plant Ontology
|
4 leaf senescence stage( PO:0001054 )
leaf development stage( PO:0001050 )
leaf( PO:0025034 )
|
|
Related Strains
|
|
-
|
|
Phenotype images
|
|
-
|
|
Last updated
|
|
Sep 27, 2024
|
Update info.