Gene - Detail

Detail of Gene

Basic Information
CGSNL Gene Symbol PUB63
Gene Symbol Synonym OsPUB63, OsPUB63, PUB63
CGSNL Gene Name PLANT U-BOX-CONTAINING PROTEIN 63
Gene Name Synonym plant U-box-containing protein 63, U-box protein 63, U-box-type E3 ubiquitin ligase 63
Protein Name PLANT U-BOX-CONTAINING PROTEIN 63
Allele
Chromosome No. 6
Explanation class VII PUB protein (TPR + U-box). Q2RAD9. EST: CA758128, CF294635, CF294636, CF306389, CF305746, CF303031, CF303481, C73147, CA765281, AU075414. OsSUF4 target gene (Liu et al. 2019).
Trait Class Biochemical character
Tolerance and resistance - Stress tolerance
Expression
Sequence/Locus
cDNA Accession No. AK063418
MSU ID LOC_Os06g06490.1
LOC_Os06g06490.2
LOC_Os06g06490.3
RAP ID Os06g0159900
Links Oryzabase Chromosome View ( IRGSP 1.0 / Build5 )
RAP-DB ( IRGSP 1.0 / Build5 )
Related IDs List ( IRGSP 1.0 / Build5 )
INSD Accession List
(Test version) 		-
Map
Locate(cM)
Link map Classical linkage map
References
Wang R., You X., Zhang C., Fang H., Wang M., Zhang F., Kang H., Xu X., Liu Z., Wang J., Zhao Q., Wang X., Hao Z., He F., Tao H., Wang D., Wang J., Fang L., Qin M., Zhao T., Zhang P., Xing H., Xiao Y., Liu W., Xie Q., Wang G.L., Ning Y.
Genome Biol. 2022  23(1)  154
An ORFeome of rice E3 ubiquitin ligases for global analysis of the ubiquitination interactome.
Kim M.S., Kang K.K., Cho Y.G.
Int J Mol Sci 2021  22(21) 
Molecular and Functional Analysis of U-box E3 Ubiquitin Ligase Gene Family in Rice (<i>Oryza</i><i>sativa</i>).
Yoo Y.H., Jiang X., Jung K.H.
Plants (Basel) 2020  9(9) 
An Abiotic Stress Responsive U-Box E3 Ubiquitin Ligase Is Involved in OsGI-Mediating Diurnal Rhythm Regulating Mechanism.
Liu B., Liu Y., Wang B., Luo Q., Shi J., Gan J., Wen-Hui Shen, Yu Y., Dong A.
Nat Commun 2019  10(1)  2999
The transcription factor OsSUF4 interacts with SDG725 in promoting H3K36me3 establishment.
Li-Rong Zeng, Chan Ho Park, R C Venu, Gough J., Guo-Liang Wang
Mol Plant 2008  1(5)  800-15
Classification, expression pattern, and E3 ligase activity assay of rice U-box-containing proteins.
DB Reference
Gramene ID -
Ontologies
Gene Ontology nucleosome( GO:0000786 )
circadian rhythm( GO:0007623 )
nucleosome assembly( GO:0006334 )
nucleus( GO:0005634 )
DNA binding( GO:0003677 )
response to salt stress( GO:0009651 )
Trait Ontology salt tolerance( TO:0006001 )
Plant Ontology -
Related Strains
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Phenotype images
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Last updated
Feb 1, 2023

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