Update info.Gene - Detail
Detail of Gene
| Basic Information | |
|---|---|
| CGSNL Gene Symbol | PK5 |
| Gene Symbol Synonym | OsPK5, OsPK10, PK10 |
| CGSNL Gene Name | PYRUVATE KINASE 5 |
| Gene Name Synonym | Pyruvate kinase 5, Pyruvate kinase 10 |
| Protein Name | PYRUVATE KINASE 5 |
| Allele | ospk5, ospk5-1, ospk5-2, ospk5-3 |
| Chromosome No. | 11 |
| Explanation | D22530. OsPK5 might be a causal gene of the key QTL qSG11.1. PO:0030123: panicle inflorescence. TO:0000949: seedling growth and development trait. GO:0097009: energy homeostasis. OsPK10 in Dong et al. 2022. PO:0030123: panicle inflorescence. TO:0000975: grain width. |
| Trait Class |
Biochemical character
Seed - Morphological traits - Grain shape Seed - Physiological traits - Storage substances Character as QTL - Grain quality Character as QTL - Yield and productivity Character as QTL - Germination |
| Expression | |
| Sequence/Locus | |
| cDNA Accession No. |
AK101789
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| MSU ID |
LOC_Os11g10980.1
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| RAP ID |
Os11g0216000 |
| Links |
Oryzabase Chromosome View
(
IRGSP 1.0
/
Build5
)
RAP-DB ( IRGSP 1.0 / Build5 ) Related IDs List ( IRGSP 1.0 / Build5 ) |
|
INSD Accession List (Test version) |
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| Map | |
| Locate(cM) | |
| Link map | Classical linkage map |
| References | |
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Yang B., Chen M., Zhan C., Liu K., Cheng Y., Xie T., Zhu P., He Y., Zeng P., Tang H., Tsugama D., Chen S., Zhang H., Cheng J.
J. Exp. Bot. 2022 Identification of OsPK5 involved in rice glycolytic metabolism and GA/ABA balance for improving seed germination via GWAS.
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Dong N., Chen L., Ahmad S., Cai Y., Duan Y., Li X., Liu Y., Jiao G., Xie L., Hu S., Sheng Z., Shao G., Wang L., Tang S., Wei X., Hu P.
Int J Mol Sci 2022 23(23) Genome-Wide Analysis and Functional Characterization of Pyruvate Kinase (PK) Gene Family Modulating Rice Yield and Quality.
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Sasaki,T., Song,J., Koga-Ban,Y., Matsui,E., Fang,F., Higo,H., Nagasaki,H., Hori,M., Miya,M. and Murayama-Kayano,E.
Plant J. 1994 6(4) 615-624 Toward cataloguing all rice genes: large-scale sequencing of randomly chosen rice cDNAs from a callus cDNA library.
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| DB Reference | |
| Gramene ID | - |
| Ontologies | |
| Gene Ontology |
cytoplasm( GO:0005737 )
response to abscisic acid stimulus( GO:0009737 ) regulation of seed germination( GO:0010029 ) gibberellic acid mediated signaling( GO:0009740 ) abscisic acid mediated signaling( GO:0009738 ) magnesium ion binding( GO:0000287 ) glycolysis( GO:0006096 ) potassium ion binding( GO:0030955 ) pyruvate kinase activity( GO:0004743 ) |
| Trait Ontology |
seed viability( TO:0000345 )
germination rate( TO:0000430 ) seedling vigor( TO:0000280 ) glucose content( TO:0000300 ) abscisic acid content( TO:0002667 ) total soluble sugar content( TO:0000340 ) fructose content( TO:0006005 ) sucrose content( TO:0000328 ) abscisic acid sensitivity( TO:0000615 ) 1000-seed weight( TO:0000382 ) seed set percent( TO:0000455 ) grain thickness( TO:0000399 ) grain yield per plant( TO:0000449 ) protein content( TO:0000598 ) starch content( TO:0000696 ) amylose content( TO:0000196 ) |
| Plant Ontology |
0 seed germination stage( PO:0007057 )
root( PO:0009005 ) seed( PO:0009010 ) leaf( PO:0025034 ) inflorescence( PO:0009049 ) seed development stage( PO:0001170 ) |
| Related Strains | |
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| Phenotype images | |
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| Last updated | |
| May 23, 2023 | |
